Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07009 ATGCCATGTTCTAAAGAAGAAGCTCTTATTAGACTCTTCTACAATTCATCATCCTCTTTCAAACTTCTCTTCCTTTTCATCTTCTCTTCTTCCACTTTACTTCTCAAAATCCTAAACTTCATTGGTAGCTACACTCTATTCCAAAGTGATCAACAATATGAATATGTTTCATCTGAGTATGATTACGAAGAAGAAGAACAAGAACAAGAAGAAGAACAAGAAGAATTTCGAGAAAGTTATTTTTATGAAGATTCTATTGAGAAAGATCATTTAGTAGCTGATATAATTTGTGGTGGAGAAGCTCTTATGTTTTTGCATAGTAATAACAAATCTCAAAGGAATCACAATTTTTCTATTGAAGAAGAAGAAGAGTTTATAACACCACAAGAAAGCTTGGTTGAAGAGTTTTCAGAAGAAGAAAAAACATCAGAAAGTTTGTATGTTCTTCACAAGTCACCAATTGTTTCAGATTTTGAGACAGAAATTAATGAAACAGAATTTCAAGAAGAAGATGCTGATTCTGTTCCTGATTCTGTTCCTTATTCTGTTCAAGATTCTGTTCATGATTCTGTTCCAACTGAAAATAGGACCACTTCTCATATCACAATGAATCTATACAAAAGTGATGACTTAGTAGAAAGTAACAAGAACTATGATGAAGAACATGTTATCAAAAACAAGAAAGTGGATGAATCAAATGTTGAAAGAGATGAGAGATTTTGTGTGATTGGTGCAACACATTTGGAGAGGAATAAGAAGTTGATATTTGAAGAAAAAGATGATGAAGAGATATATGGTGATTCATGCACTGTTGGTTCAACATCAAAAAGCTCTTCTGATTGGAGAAGCTCAATTATTTGTAGAGATTCTGGAACTGATGACCCTTTTTCTTCTTCTTCAAGAGGAAGTTGTCCTAAGTGGGAATCTTACACTGTTTTTCAAAAATATGATGAAGAAATGTCTTTCCTAGAAAGAATTAGTGCACAAAAACTTCATGAAACAGAGTCTTTAAGATCTATCAAAGTAGCTCCAAGATCAATTTCAGAGAGAATTGTGTACAAGTTTTCAAGTATAAACAAAAAACCAGAAGATACAAGTAATCACAACCCATATTGTGAATTGGAAAGTGCTTATGTTGCACAAATTTGCTTAACATGGGAAGCACTTAATTGGAACTACAAGAATTTTCAATCAAAAAGAGCTTCAAATGTTGATGTTGGCTGTCCAGCAACAATTGCACAACAATTTCAACAGTTTCAAGTTTTGTTGCAAAGATATGTTGAGAATGAACCTTATGAGTATGGTAGAAGACCTGAGATTTATGCTAGAATGAGACATTTGGCTCCAAAGTTGCTCCTAGTCCCTGAATATAGAGATTCAGATGATGATCAGAAGGAGAAGGTTGGGTTTAACTCAAAAATTTCATCAGATTCATTTCTAGTGATAATGGAAGATGGAATCAAAACATTCATGAATTTCTTAAAGGCTGATAAAGAGAGAACATGTCAGATCCTTGCATCTTACTTTCGAAGAAATCGAAGAACCTTGATTGATCCAACATTAATTCGTCTTATGAAGAAAGTTAATCAAAAGAAGAAGATGAAAGTTAAGGATCTTAAACGATCTCACAAATGCTTGAGGAAAAGAAATTTAAAGGAGGAAGAAGAGATGGAAATTTTGATGTCATTAATAGACTTAAAAGTGGTGTCAAGGGTTTTAAGAATGAGTGAGATGAATGAAAATCAATTACATTGGTGTGAAGAGAAAATTAGCAAAGTAAAAGTCATTGATGGGAAGCTACAGAGGGATTCCACTCCACTTTTCTTTCCATCACATTGA 1839 0.3312 MPCSKEEALIRLFYNSSSSFKLLFLFIFSSSTLLLKILNFIGSYTLFQSDQQYEYVSSEYDYEEEEQEQEEEQEEFRESYFYEDSIEKDHLVADIICGGEALMFLHSNNKSQRNHNFSIEEEEEFITPQESLVEEFSEEEKTSESLYVLHKSPIVSDFETEINETEFQEEDADSVPDSVPYSVQDSVHDSVPTENRTTSHITMNLYKSDDLVESNKNYDEEHVIKNKKVDESNVERDERFCVIGATHLERNKKLIFEEKDDEEIYGDSCTVGSTSKSSSDWRSSIICRDSGTDDPFSSSSRGSCPKWESYTVFQKYDEEMSFLERISAQKLHETESLRSIKVAPRSISERIVYKFSSINKKPEDTSNHNPYCELESAYVAQICLTWEALNWNYKNFQSKRASNVDVGCPATIAQQFQQFQVLLQRYVENEPYEYGRRPEIYARMRHLAPKLLLVPEYRDSDDDQKEKVGFNSKISSDSFLVIMEDGIKTFMNFLKADKERTCQILASYFRRNRRTLIDPTLIRLMKKVNQKKKMKVKDLKRSHKCLRKRNLKEEEEMEILMSLIDLKVVSRVLRMSEMNENQLHWCEEKISKVKVIDGKLQRDSTPLFFPSH 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07009 612 Coils Coil 529 556 - -
Vifa1g07009 612 PANTHER DNA LIGASE (DUF1666)-RELATED 12 612 - -
Vifa1g07009 612 Coils Coil 55 75 - -
Vifa1g07009 612 Pfam Protein of unknown function (DUF1666) 373 610 IPR012870 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07009 Vifa-Chr1 1083082690 1083086508 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07009 - - tpra:123885200 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07009 1 1083082690 1083086508 Vifa1g07009 1 1083082690 1083086508 ECH
Vifa1g07009 1 1083082690 1083086508 Vifa1g07009 1 1083082690 1083086508 PCT