Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06990 ATGGTGCGTCGCAAACGGGAAAGTCTCCCACCGAAGATTTCAAGCGATGATTATCCTTCAAAGCGTAGAAGACATTCCATGTTCGAAATTTCGGCCTCTAATCACCGAGTATCTTCCTCTTCTAGGAAATGGGTTTTCTCCTCCGAAAATTGCTCTGATTGCACGGATACGATTCTAGTTGTTTCATACAATATACTTGGTGTTGAAAATGCATCAAATCATATGGATTTATATTCCAATATCCCACGACGTTTCTTGGAGTGGGGAAGACGCAAGAGGCTTATACTTGACGAGATTAACAGCTATAATGCAAGTATACTCTGTTTCCAGGAGGTTGATCATTTTGATGATTTGGATGATCTTTTTCAGAACAATGGCTTTAAAAGTGCTTACAAGGCTCGCACGGGAGAAGCAAACGATGGATGTGCTATATTTTGGAAAGACAAATTATTCAGTCTTTTGCATCAAGAAGATATCGAGTTCCAAAAGTTTGGTCTGCGTAACAATGTTGCTCAGCTTTGTGTTTTGGAGGTAAACAATGATAGTCCAGAATCTGAAGCATGTAAACTAACAGCAGGGGAAGAATCCACCAAAAACAAAAGATTTGTAATAGGAAATATACACGTGTTGTTCAACCCTAACCGTGGTGATATCAAACTTGGCCAGGTCAGACTTTTAATTGATAAAGCTTACAAGTTATCACAAGAATGGGGAAACATCCCTGTTATTTTAGCTGGAGATTTAAACAGTGTACCACAGAGTGCAATATATAAATTTCTGTCTTCATCAAAGTTAGACATCCAATTACATGATCGCAGAAATATGTCAGGACAGCTTGAAATCCGGCCCAATCACAGATACTTCAGATCAAAGATTGGTGATGATGCTAGCATTTCAATGTCTGTTTCAAGGCAAATAGTATACAAATGGAGTGCGGAAGAACTAATCCTTGCAACTGGCGCAAAAGGAGTCACTCGACTTCAGCACCAGCTCAAGCTCCGCAGTGCTTATAGTGGCATTCCTGGAAAGCTTAGAACAAGAGATGATATTGGAGAGCCCTTGGCAACATCATACCACTCTAAGTTCATGGGAACTGTTGATTATATCTGGCATTCTGAGGAACTTATCCCAGTCAGAGTTCTTGAAACCTTGCCCATTGATATTCTTAGAAGAACTAGAGGACTCCCTAACGAGAATTGGGGAAGTGACCACCTCGCCGTTGTATGTGAATTTGCCTTTGCAAAAACTGCTGAAAGTTCTGATTCTCGTGATCTTCCCTAG 1281 0.4052 MVRRKRESLPPKISSDDYPSKRRRHSMFEISASNHRVSSSSRKWVFSSENCSDCTDTILVVSYNILGVENASNHMDLYSNIPRRFLEWGRRKRLILDEINSYNASILCFQEVDHFDDLDDLFQNNGFKSAYKARTGEANDGCAIFWKDKLFSLLHQEDIEFQKFGLRNNVAQLCVLEVNNDSPESEACKLTAGEESTKNKRFVIGNIHVLFNPNRGDIKLGQVRLLIDKAYKLSQEWGNIPVILAGDLNSVPQSAIYKFLSSSKLDIQLHDRRNMSGQLEIRPNHRYFRSKIGDDASISMSVSRQIVYKWSAEELILATGAKGVTRLQHQLKLRSAYSGIPGKLRTRDDIGEPLATSYHSKFMGTVDYIWHSEELIPVRVLETLPIDILRRTRGLPNENWGSDHLAVVCEFAFAKTAESSDSRDLP 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06990 426 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 28 413 - -
Vifa1g06990 426 Pfam Endonuclease/Exonuclease/phosphatase family 61 404 IPR005135 GO:0003824
Vifa1g06990 426 SUPERFAMILY DNase I-like 57 412 IPR036691 -
Vifa1g06990 426 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g06990 426 Gene3D Endonuclease/exonuclease/phosphatase 31 423 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06990 Vifa-Chr1 1079631977 1079637142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06990 88 262 EF-hand Containing Proteins AT5G54130 26.087 1.43e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06990 - - gmx:100777474 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06990 1 1079631977 1079637142 Vifa1g06990 1 1079631977 1079637142 ECH