Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06972 ATGTCGATGAATTCAAGTCCTTTTCTTCGCAATTTCAACACCTTGCAACTTCGCATTCAATTTCGTTTCTATACCCGTCGTCGTGACCCTTTTCCCACAAAAATCTGCCACTACCTAAACCGTGCAAAGCTCATAGATTCAATTCGACTTTCTCTACGCTCCAACAACCCTAACTCCACACTCCCCACTCTCATAACCCACCGCTTATTCGACTCTTTTGTTGTCACTCATGCACTTCGTTCTGCACCTTGTGCAGATTCTGCACTTTCACTCATTCGTACTATAGAGAAAACAGAAAGTACACATTTTTCACATACCCAGAATACCCTTCACTCTCTTGCCACTGTGCTAGCAAAATCTGGTAGATGTGATGAGCTTAAATCCCTCATTGATGATATCCAAAGGAAAAGGTTTGGAAATGTTAAGATCAGTTTTATGAATCTAATGCAGTGGTATGCTGCAGCTAGGGATATTGATTCTGTTCTCGAGGTTTGGGATCGGTATAGAGTTGATGTGAGTAACCGTGTATGTACTGAATCTTATAACATTGTTATGTCTCTTTATGTAGAAATGGGTAAGGACTATGAGGCTGTTGGAGTTTTTTGTAAAATGGTTGATGAAGGTTCGGTTCCTAATTGTAGAAGCTTTAGTATAATAATTGAGCATCTTGTGAAAGCAAGGAAGTTTTTGGAAGCTATTGAGGTTTTTAATTTGTTGCCTTTGATGAGGATTAAGCGGACTTTGAAGCAGTACTCGGTTCTAATTGAAGGTTTGGTTGGTAGTAAAATGTTTGATGAAGTTGGAGTTTTGGTTACTGAGATGCAAGTTGATGGAATATTACCTAGTCGAACAGTGAGTTTGTTATTGAAGCAGGTGAAGGATGAAGGATTTCTTAAGGATATGGATGAATTGTTGTTTACAGAAATTTGCCCGGATGAAAGAATCAAGAATGTAAGATATTGTAATGATAGTAGTGATGGGGATGAGAATGAGGACGAGGGTGAAAATGAAAATGGGAATGGTGATTTGCAATGTGATCATGTAAATGGGATCCGCTTAAAACCCTGGCTGGACCTGCGGTCTCTGGCTAGTGCCTTACAGAACTGGAGTCCTGGTGAGGTATCAGCACTAGAGAATGCAAAGTTTGTATGGACAACTAGGTTAGTGTGCAAGATGCTTAGAAGTTTCAATAAACCAGATACTGCGTGGAATTTCTTTTGCTGGGTTGCGGGTCAACCTGGATTTACTCATAATATATACACGGTGCAAAGAATCATGACCCTTCTAGCGCGCCATGGACATACTGAGTTAGTTGATAAACTCATCTCCAAGATCAGAATAGAGGGAATGAGACTACCATTCAGCACCTTAAGATTAATCATTGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTCTGAAGGTTTTCAACGATGATCGAATACTTTGTGGGTCTATATCAAAAGTTAATATGATGCTTCTGTATTCGTCTCTTTTAAGAACGTTAACCAAGTGTGGCAAGGATTCTGATGCTCTGGAAATGCTTGATGAGATGATTTTAAATGGAATTTGCCCAGATATCCAAACATTTTCAGGTCTAATGCAATATTTTTCACAACTTGGTGACATTAAAACTGCACAGACACTCTTTTCAATGGTCAGACAGAGCGGTTTTGAGCCCGACGCGTATCTGTTTAAGGTACTAATTGAAGGTTATTGCAAGTCGAAAAGAGCTGCACTGGCTTGGAGGCTATTTGAAGACATGAAGAATTCGGGTTTGATGCCTGATTTTGCCACCAAAGAGTTGCTTGTGAAGAGCCTCTGGAGAGAAGGGAGACGGAGAGAGGCCGCAGCGGTAGAAGAGAGCTGTGAGGAAGTGAAAATGGTCCTTCCACCTGCATTGCCTGGTCATGTATGGACTGTCAGCTCTGCAGATCTCACAAGAGTTTTTAACATTTATTCAAATTGTTTTACTTCAAAAGGTGGCTAG 1992 0.4041 MSMNSSPFLRNFNTLQLRIQFRFYTRRRDPFPTKICHYLNRAKLIDSIRLSLRSNNPNSTLPTLITHRLFDSFVVTHALRSAPCADSALSLIRTIEKTESTHFSHTQNTLHSLATVLAKSGRCDELKSLIDDIQRKRFGNVKISFMNLMQWYAAARDIDSVLEVWDRYRVDVSNRVCTESYNIVMSLYVEMGKDYEAVGVFCKMVDEGSVPNCRSFSIIIEHLVKARKFLEAIEVFNLLPLMRIKRTLKQYSVLIEGLVGSKMFDEVGVLVTEMQVDGILPSRTVSLLLKQVKDEGFLKDMDELLFTEICPDERIKNVRYCNDSSDGDENEDEGENENGNGDLQCDHVNGIRLKPWLDLRSLASALQNWSPGEVSALENAKFVWTTRLVCKMLRSFNKPDTAWNFFCWVAGQPGFTHNIYTVQRIMTLLARHGHTELVDKLISKIRIEGMRLPFSTLRLIIDFYGISKNADAALKVFNDDRILCGSISKVNMMLLYSSLLRTLTKCGKDSDALEMLDEMILNGICPDIQTFSGLMQYFSQLGDIKTAQTLFSMVRQSGFEPDAYLFKVLIEGYCKSKRAALAWRLFEDMKNSGLMPDFATKELLVKSLWREGRRREAAAVEESCEEVKMVLPPALPGHVWTVSSADLTRVFNIYSNCFTSKGG 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06972 663 MobiDBLite consensus disorder prediction 321 341 - -
Vifa1g06972 663 Pfam PPR repeat 180 208 IPR002885 -
Vifa1g06972 663 Pfam PPR repeat 215 238 IPR002885 -
Vifa1g06972 663 Gene3D Tetratricopeptide repeat domain 173 308 IPR011990 GO:0005515
Vifa1g06972 663 NCBIfam pentatricopeptide repeat 180 213 IPR002885 -
Vifa1g06972 663 NCBIfam pentatricopeptide repeat 566 597 IPR002885 -
Vifa1g06972 663 NCBIfam pentatricopeptide repeat 496 528 IPR002885 -
Vifa1g06972 663 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Vifa1g06972 663 Gene3D Tetratricopeptide repeat domain 61 169 IPR011990 GO:0005515
Vifa1g06972 663 Gene3D Tetratricopeptide repeat domain 364 490 IPR011990 GO:0005515
Vifa1g06972 663 Pfam PPR repeat family 561 608 IPR002885 -
Vifa1g06972 663 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Vifa1g06972 663 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Vifa1g06972 663 Gene3D Tetratricopeptide repeat domain 491 635 IPR011990 GO:0005515
Vifa1g06972 663 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Vifa1g06972 663 Pfam Pentatricopeptide repeat domain 496 538 IPR002885 -
Vifa1g06972 663 PANTHER OS01G0167750 PROTEIN 13 661 IPR044175 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06972 499 639 Glycosyltransferase AT1G05670 28.369 2.02e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06972 - - cam:101514749 1083.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06972 1 1076214535 1076216526 Vifa1g06972 1 1076214535 1076216526 ECH