Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06967 ATGCAACCCTCTTATTGTGTGAAGGAAAATAAACCCTGTGTCGGTTGGGTTCAAAACTACTTCAGTGACTGTCTCTGCAATGTGAATGATGATATCTCATTCATTTTTGGTTTCATCAGTTTAATTTGTTGGGGTGTTGCTGAAATTCCTCAGATTATTACTAATTTTCGTGCTAAGTCTAGTCATGGTGTTTCTCTTGTTTTTCTTCTTACTTGGGTTGCTGGAGATTTTTTCAACTTGGTGGGTTGTCTTCTAGAACCAGCTACGTTGCCAACCCAATACTACACAGCTCTGCTTTACACAATCACAACGATCGTATTAGTATTGCAAAGCTTCTATTATGACTACATCTATAAATGGTGCAACCGTCGTCAAAAGACCAACGTTGAAGAGGCTTATGAGGAAGAGAAAAAACCATTGAAACCAAAACAAGCACATGAGTCCGGAATTCCAATAAGAAGTGGCAAACACAGAACAATTTCTAGTAGACCAGAGTATTACTATGGATCAGCAAGATCATTGGCGGGTAATATGACTCCGCCGTCTCGAACATACTTGAGAGTTGCTAAAAGTGGACCATCAACAATGGGACTAGACGACGATTCATCTTCTGATGACGACGATGCACATTCACCTCCTGCAACACAACCGAGACTAATCCCTCGTTCTGCGGGAAGCTATGGAACATTTCTAGCAACATCAATTAGCTTGCCCCGCCAAAGTAATGCTTTGAAAATGGGATACATAGCACTGACTGGAAGAAAACTACTCTCCCAAGAACATGTAACGCACCACAGTGCATTAGGTCAATGGTTGGGATGGCTCATGGCTGCTATCTATACAGGCGGTCGAATACCTCAAATATGGTTAAACATTAAAAGAGGGAGTGTTGAGGGGTTAAATCCTTTCATGTTCATCTTTGCACTGATTGCCAATGCAACTTATGTGGGAAGTATTCTTGTAAGAACTAGAGAATGGGAAAGCATCAAAGCTAATATGCCATGGTTATTGGATGCAATTGTTTGCGTCGCATTGGACCTTTTTATAATATTGCAGTACATCAATTACAGATACCATCGGAAGACAACTGCGAATGATGATTATGGTAACTATGAAAACCACAAAGTGAGAAAAACTATTGTTTCTTGA 1149 0.403 MQPSYCVKENKPCVGWVQNYFSDCLCNVNDDISFIFGFISLICWGVAEIPQIITNFRAKSSHGVSLVFLLTWVAGDFFNLVGCLLEPATLPTQYYTALLYTITTIVLVLQSFYYDYIYKWCNRRQKTNVEEAYEEEKKPLKPKQAHESGIPIRSGKHRTISSRPEYYYGSARSLAGNMTPPSRTYLRVAKSGPSTMGLDDDSSSDDDDAHSPPATQPRLIPRSAGSYGTFLATSISLPRQSNALKMGYIALTGRKLLSQEHVTHHSALGQWLGWLMAAIYTGGRIPQIWLNIKRGSVEGLNPFMFIFALIANATYVGSILVRTREWESIKANMPWLLDAIVCVALDLFIILQYINYRYHRKTTANDDYGNYENHKVRKTIVS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06967 382 MobiDBLite consensus disorder prediction 179 222 - -
Vifa1g06967 382 SMART ctns 282 313 IPR006603 -
Vifa1g06967 382 SMART ctns 46 77 IPR006603 -
Vifa1g06967 382 MobiDBLite consensus disorder prediction 134 156 - -
Vifa1g06967 382 Gene3D - 269 370 - -
Vifa1g06967 382 Gene3D - 31 135 - -
Vifa1g06967 382 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 5 360 - -
Vifa1g06967 382 FunFam Vacuolar membrane PQ loop repeat protein 268 366 - -
Vifa1g06967 382 FunFam PQ-loop repeat family protein / transmembrane family protein 32 128 - -
Vifa1g06967 382 Pfam PQ loop repeat 268 323 IPR006603 -
Vifa1g06967 382 Pfam PQ loop repeat 32 88 IPR006603 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06967 Vifa-Chr1 1075005868 1075009209 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06967 K23678 - gmx:100780977 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06967 1 1075005868 1075009209 Vifa1g06967 1 1075005868 1075009209 ECH