Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06952 ATGGCTATGGTGGATCAACCTCTATATCCGATTGCTGTTCTAATCGACGAGTTGAAGAACGAGGATATTCAACTCAGGCTGAACTCGATCCGTAGGCTTTCAACGATTGCGCGTGCTTTGGGTGAGGAGAGGACAAGGAAAGAGCTGATTCCTTTCCTCAGCGAGAATAATGATGATGATGATGAGGTGCTTCTTGCAACGGCTGAGGAATTGGGGGTTTTTGTTCCGTATGTTGGTGGTGTGGAGCACGCTAGCGTTTTGCTTCCACCTTTGGAAACTCTTTGTACTGTTGAGGAGACCTGTGTTAGGGATAAGTCGGTTGAGTCGCTTTGTAGAATTGGTGCTCAGATGAGGGAGCAAGATTTGGTTGATCACTTTATTCCTTTAGTTAAGAGGCTGGCTTCTGGTGAGTGGTTCACTGCCCGGGTTTCTTCATGTGGCTTGTTTCATATTGCCTACCCTAGTGCACCAGATGCGTTGAAGACTGAACTTAGAACCATATATGGTCAGTTGTGTCAAGATGATATGCCTATGGTTAGGAGATCTGCTGCTACCAATCTGGGAAAATTTGCTGCTACTGTTGAAGCTTCTCACTTGAAAACCGACATCATGTCTGTGTTCGATGATCTCACACAGGATGATCAAGATTCTGTTCGGCTTCTTGCTGTTGAGGGTTGTGCAGCTCTTGGAAAATTGTTGGAGCCTCAAGATTGTGTGGCACATATTCTTCCTGTTATAGTCAATTTTTCTCAGGATAAGTCATGGCGCGTTCGTTACATGGTTGCCAATCAACTCTATGAGCTTTGTGAAGCTGTCGGTCCTGATTCCACCAAGACGGAATTGGTGCCTGCGTATGTTCGGCTGCTACGCGATAATGAGGCGGAAGTACGTATTGCCGCTGCTGGGAAAGTGACCAAGTTCTCCCGCATATTGAGTCCCGAACTAGCCATTCAGCATATTCTACCATGTGTAAAGGAGTTATCGACAGATTCATCTCAACATGTTCGCTCTGCATTGGCTTCGGTTATAATGGGAATGGCACCGGTCTTGGGGAAGGATGCTACAATTGAGCAACTTCTCCCTATTTTCCTCTCTCTTTTGAAAGACGAGTTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAACCAGGTTATTGGTATTGATCTCTTATCTCAGTCGCTTTTACCAGCTATTGTTGAGCTTGCTGAGGATCGGCACTGGAGAGTTAGACTTGCAATCATAGAATATATACCATTGTTAGCAAGTCAGTTGGGTGTAGGCTTTTTTGATGATAAGCTTGGAGCTCTTTGCATGCAATGGCTAAAAGACAAGGTATACTCAATCCGTGATGCAGCTGCCAATAATGTCAAACGCTTAGCAGAGGAATTTGGACCAGAGTGGGCAATGCAGCACATTATTCCCCAAGTTTTGGACATGATTAATGATCCACATTACCTGTATCGAATGACAATTCTACATGCAATTTCTCTATTAGCCCCCGTTCTGGGCTCAGAAATTACTTCCACAAACCTGCTTCCTCTAGTCGTTAATGCATCAAAAGATAGGGTACCCAATATCAAATTCAATGTTGCTAAAGTATTGCAGTCTCTCATTCCAATTGTTGATGAATCTGTTGTGGAGAGTACCATCCGTCCATGTCTTAATGAGCTTAGCGAGGATCCAGATGTTGATGTGAGGTTTTTCGCTTCTCAAGCGCTACAATCTAGTGATCAAGTGAAGATGTCCAGCTAG 1764 0.4433 MAMVDQPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLATAEELGVFVPYVGGVEHASVLLPPLETLCTVEETCVRDKSVESLCRIGAQMREQDLVDHFIPLVKRLASGEWFTARVSSCGLFHIAYPSAPDALKTELRTIYGQLCQDDMPMVRRSAATNLGKFAATVEASHLKTDIMSVFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDSTKTELVPAYVRLLRDNEAEVRIAAAGKVTKFSRILSPELAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPEWAMQHIIPQVLDMINDPHYLYRMTILHAISLLAPVLGSEITSTNLLPLVVNASKDRVPNIKFNVAKVLQSLIPIVDESVVESTIRPCLNELSEDPDVDVRFFASQALQSSDQVKMSS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06952 587 Gene3D - 2 579 IPR011989 -
Vifa1g06952 587 ProSiteProfiles HEAT repeat profile. 164 202 IPR021133 -
Vifa1g06952 587 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 4 585 - -
Vifa1g06952 587 Pfam HEAT repeats 361 459 - -
Vifa1g06952 587 ProSiteProfiles HEAT repeat profile. 281 319 IPR021133 -
Vifa1g06952 587 ProSiteProfiles HEAT repeat profile. 203 241 IPR021133 -
Vifa1g06952 587 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Vifa1g06952 587 ProSiteProfiles HEAT repeat profile. 515 553 IPR021133 -
Vifa1g06952 587 ProSiteProfiles HEAT repeat profile. 476 514 IPR021133 -
Vifa1g06952 587 ProSiteProfiles HEAT repeat profile. 320 358 IPR021133 -
Vifa1g06952 587 ProSiteProfiles HEAT repeat profile. 554 587 IPR021133 -
Vifa1g06952 587 SUPERFAMILY ARM repeat 8 579 IPR016024 -
Vifa1g06952 587 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Vifa1g06952 587 Pfam HEAT repeat 242 270 IPR000357 GO:0005515
Vifa1g06952 587 ProSiteProfiles HEAT repeat profile. 398 436 IPR021133 -
Vifa1g06952 587 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 2 581 - -
Vifa1g06952 587 ProSiteProfiles HEAT repeat profile. 359 397 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06952 Vifa-Chr1 1073137929 1073144327 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06952 K03456 - gmx:100799440 1101.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06952 1 1073137929 1073144327 Vifa1g06952 1 1073137929 1073144327 ECH