Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06943 ATGGCTTTTTCAAAATCACTTCTATCCTTCACCCTCACCTTATCACTTTTCATCACAACAATCTCTCTTTTTCCATTTCCAACTTTCTCTCGCATCACTCCTTCACACACTACTACTCTTCTTGATGTCTCTTCCTCAATTCACCAAACCAAACAAGTCCTTAACTTCAACCCTAATCAAAATCTTCTAGAAGCCTCTAACACTCAAGAAAAAATCACCCAACACAAACCCATTTCAAATTCTTCACATTCCTTCTCCATTCTCATCCACCCAAGAGAAACCCTCTTGAATGAACATCACAAAGACTATAAAAAACTAGTCTTGGCACGACTCGCTCGTGACTCAGCCCGAGTCAACTCACTCACAACAAAACTCAAACTTTCCCTCAACAACATCAAAAAATCAGATCTTCACCCGACCCAAGTAGAGCTCCAACAAGAAGATCTCTCAACTCCAGTCTCCTCCGGCACCGGTCAAGGCTCCGGCGAGTATTTCACCCGACTCGAAGTGGGTCAACCCGCAAAACCCTACTACATGGTTCTCGACACAGGAAGCGACGTGAACTGGATCCAATGCAAACCCTGCTCCGAATGTTATCAACAAACCGACCCGATTTACGACCCGACAACATCTTCAACCTACGAATCATTAACCTGCGAAGCACAACAGTGTCAAAAGCTAGAAGTTTCCGCTTGTCGAAGCGGTAATTGTCTCTACCAAGTTAACTACGGTGACGGTTCTTTCACCGTCGGTGAATACATGACCGAAACGATGTCGTTTGGTTCATCCGGGTCGATTAACCGGGTCGCAATCGGGTGCGGGCATGATAACGAAGGCTTATTCGTCGGAGCTGCTGGTTTACTCGGACTCGGTGGTGGAGCCCTCTCGTTAACTTCACAGATCAAAGCGTCGTCGTTTTCGTATTGTTTAGTAGATCGTAACTCAGATAAATCGTCAACACTCGAGTTCAACTCACTCAAACCCGCTGACTCAGTAACAGCACCGTTGTTAAGAAACTCGAAACTCGAAACTTTCTACTACGTTCAGCTCACCGGAATGAGTGTCGGAGGTAATATGGTATCCGTCCCGCCGGAGATTTTCTCGGTAGACCAATCCGGTAGTGGAGGAATCATCGTTGACTCAGGAACCGCCATAACTCGGTTGCAGACTCAAGCCTATAACTCAGTTCGCGACGAGTTTAAAAGATTGACTCAAAATCTCCGTTCAGCGGAAGGTATAGCTCTTTTCGATACGTGCTATGATCTATCAAATTTGCAAAGTGTGCGTGTTCCAACGGTGTCGTTTCATTTCGGCGGCGACAAAGTTTGGAATTTGCCGGCGAAGAATTACTTGATTCCGGTGGACTCCTCCGGAATTTTCTGTTTTGCTTTTGCTCCGACGTCGTCGGCGTTGTCAATTATTGGGAATGTTCAACAACAAGGGACACGTGTCAGCTTTGATCTTGCAAATAGTTTAATGGGATTTTCACCTAATAAGTGTTAA 1503 0.4544 MAFSKSLLSFTLTLSLFITTISLFPFPTFSRITPSHTTTLLDVSSSIHQTKQVLNFNPNQNLLEASNTQEKITQHKPISNSSHSFSILIHPRETLLNEHHKDYKKLVLARLARDSARVNSLTTKLKLSLNNIKKSDLHPTQVELQQEDLSTPVSSGTGQGSGEYFTRLEVGQPAKPYYMVLDTGSDVNWIQCKPCSECYQQTDPIYDPTTSSTYESLTCEAQQCQKLEVSACRSGNCLYQVNYGDGSFTVGEYMTETMSFGSSGSINRVAIGCGHDNEGLFVGAAGLLGLGGGALSLTSQIKASSFSYCLVDRNSDKSSTLEFNSLKPADSVTAPLLRNSKLETFYYVQLTGMSVGGNMVSVPPEIFSVDQSGSGGIIVDSGTAITRLQTQAYNSVRDEFKRLTQNLRSAEGIALFDTCYDLSNLQSVRVPTVSFHFGGDKVWNLPAKNYLIPVDSSGIFCFAFAPTSSALSIIGNVQQQGTRVSFDLANSLMGFSPNKC 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06943 500 PANTHER ASPARTYL PROTEASES 81 494 IPR001461 GO:0004190|GO:0006508
Vifa1g06943 500 FunFam Aspartyl protease AED1 144 324 - -
Vifa1g06943 500 ProSiteProfiles Peptidase family A1 domain profile. 164 496 IPR033121 -
Vifa1g06943 500 SUPERFAMILY Acid proteases 159 500 IPR021109 -
Vifa1g06943 500 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 179 190 IPR001969 GO:0004190|GO:0006508
Vifa1g06943 500 CDD cnd41_like 163 500 IPR033873 -
Vifa1g06943 500 Pfam Xylanase inhibitor N-terminal 164 323 IPR032861 -
Vifa1g06943 500 Gene3D Acid Proteases 138 321 IPR021109 -
Vifa1g06943 500 FunFam Aspartyl protease family protein 2 325 500 - -
Vifa1g06943 500 Gene3D Acid Proteases 322 500 IPR021109 -
Vifa1g06943 500 Pfam Xylanase inhibitor C-terminal 346 496 IPR032799 -
Vifa1g06943 500 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 377 388 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06943 Vifa-Chr1 1071655056 1071656558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06943 141 500 Miscellaneous Gene Families AT1G77480 26.420 4.71e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06943 K22683 - gmx:100784849 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06943 1 1071655056 1071656558 Vifa1g06943 1 1071655056 1071656558 ECH