Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06940 ATGAAAAATAACCCCATGATGCAACGTTTGGTTGATCATGTCCTCGTCGTCACTAAAGAGTCAGTGAAAGCTGTTACTTGTGAGTCATTGAATAATATAGTTAGGATAATCAATGGAATATCTGCACTTTTGTTGGCATTACTTCCTGGAAATGCGAAAATACTTGAAGGTATTCATGGTTGGGAACTCAGGCCGACTTTTCGAGGACCGCGGTTTCCGCGTTGGATGGAGAACGGCGCGTCCAATTTCAACCAATTCATTCACGAACTTTCTATGGACTCTGATAACTCAAGCCTTGAATACTCATCGTCCGGAGAAGAAGATAGTGATAGATATGAATGCCCTCCGTCTCCCGCGTCACATAGTTCTAGAGCCTCTGAAGCTGCTTTTACTAGAAACACTTATTTTGTGGTGTTAAAAGTGCTACATATCTCTAGAGAGAAACGCCCTTCACATTTACATGCATATAGGAGAGTGCAAAGCATCAAGGATCACTTTATCCATCGTGCTACTGATAGAAGACGCGGCGTTGTAGAGGATCTTCATCTTGGTATTGAGATATGTATAGAAGCTGTCTTCGATGTTGTTCGCAAAGGAGCACATCTTCTCCTATCTCCGACAAAAGCTTTTGGTGCATTATTCAGGTTGTTTACATCTCATGAAAGTGGCAATGAAGAAATTCGAAATTCTGCTGAGGATGCATCGACTTCTACATCCACGCTAGGGGATGAAGACCCTGCACTGCCTAAGAGGAAAATCAACTATCAGTCTTTGAATACCGAGGCGCGTACATGTCAGGATGTCATAACAGATCTCGGGTATCCGTACGAAGCTATTCGCGTGATTACTGCTGATGGATATATTCTTCTTTTGGAAAGAATACCTCGGCGAGATGCTAAAAAAGCTGTTTTTCTTCAGCATGGTGTTTTTGATTCATCAATGGGTTGGGTATCTAATGGTGTTGTTGGCTCTCCAGCTTTTGCGGCCTATGATCAAGGATATGATGTATTTCTCGGGAACTTTCGTGGTTTGGTTTCCAGAGAACATGTCAACAAGAACATATCATCGCGACAATATTGGCAGTACTCCGTCAACGAGCACGCGACGGAGGATATTCCTGCTATGATTGAGAAAATCGATGAAGTGAAAACTGCTGAATTGAAGCTTAGTAAACCTGATATTGAGGAGGAAACCGATGACGATCAGCTTTACAAGCTTTGTGCGATTTCTCATAGTTTAGGAGGAGCCGCAATGATAATAGATTCTATTAACTATTGCGGCTCCCCTCGGGATCTTCATAACCTACCTGCCGTCGGAGGACTGGTTCAAACCTTAATGAGTTATGTTGTTGGTGGAGATAGCTCAAATTGGGTCGGAGTTTTAGGACTACCACACTACAACATGAACGACATGCCGGGAGTGTCTTTTCGTGTTGCTCTTCATCTTGCGCAGATTAAACGTGTTGGAAGGTTTAGAATGTTCGATTACGGGAGTGCCTCTGCAAATAGACAAGCCTACGGTTCACCGGAGCCTTTGGACTTAGGTAAACACTACGGGCTTATAGACATTCCTGTTGATCTTGTTGCTGGACATAAAGACAAAGTTATTCGACCTTCAATGGTAAAGAGACACTATAGATTGATGAAAAGTGCCGGTGTAAATGTTTTGTATAACGAATTTGAATACGCGCATTTGGACTTCACGTTCTCGCACCGCGAAGAACTCTTGTCATATGTTATGTCACGCATGTTGCTAGTTGATCAAAACTCAAAGCATCAAGTGAATCAAAGGATGGAAAAAATCGAGGAGAATCAGACAAGGTGA 1824 0.4265 MKNNPMMQRLVDHVLVVTKESVKAVTCESLNNIVRIINGISALLLALLPGNAKILEGIHGWELRPTFRGPRFPRWMENGASNFNQFIHELSMDSDNSSLEYSSSGEEDSDRYECPPSPASHSSRASEAAFTRNTYFVVLKVLHISREKRPSHLHAYRRVQSIKDHFIHRATDRRRGVVEDLHLGIEICIEAVFDVVRKGAHLLLSPTKAFGALFRLFTSHESGNEEIRNSAEDASTSTSTLGDEDPALPKRKINYQSLNTEARTCQDVITDLGYPYEAIRVITADGYILLLERIPRRDAKKAVFLQHGVFDSSMGWVSNGVVGSPAFAAYDQGYDVFLGNFRGLVSREHVNKNISSRQYWQYSVNEHATEDIPAMIEKIDEVKTAELKLSKPDIEEETDDDQLYKLCAISHSLGGAAMIIDSINYCGSPRDLHNLPAVGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPGVSFRVALHLAQIKRVGRFRMFDYGSASANRQAYGSPEPLDLGKHYGLIDIPVDLVAGHKDKVIRPSMVKRHYRLMKSAGVNVLYNEFEYAHLDFTFSHREELLSYVMSRMLLVDQNSKHQVNQRMEKIEENQTR 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06940 607 MobiDBLite consensus disorder prediction 225 247 - -
Vifa1g06940 607 ProSiteProfiles Ig-like domain profile. 5 131 IPR007110 -
Vifa1g06940 607 PANTHER LYSOSOMAL ACID LIPASE-RELATED 463 585 - -
Vifa1g06940 607 Pfam Partial alpha/beta-hydrolase lipase region 266 320 IPR006693 GO:0006629
Vifa1g06940 607 MobiDBLite consensus disorder prediction 229 243 - -
Vifa1g06940 607 MobiDBLite consensus disorder prediction 97 125 - -
Vifa1g06940 607 Gene3D alpha/beta hydrolase 425 584 IPR029058 -
Vifa1g06940 607 Gene3D alpha/beta hydrolase 254 423 IPR029058 -
Vifa1g06940 607 SUPERFAMILY alpha/beta-Hydrolases 263 579 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06940 Vifa-Chr1 1071054595 1071058067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06940 7 595 Lipid Metabolism Gene Families AT1G18460 52.243 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06940 - - rvl:131310630 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06940 1 1071054595 1071058067 Vifa1g06940 1 1071054595 1071058067 ECH
Vifa1g06940 1 1071054595 1071058067 Vifa1g06940 1 1071054595 1071058067 PCT