Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06907 ATGGAAACTCGAAAAACTCTCTCACCTTCCTTGTTGATTTTCTTCCTTATTACCATTTCCCTGTGTCAATCAAAGGCACTATCAAGTGAGGAACACAGTACTGTGAAGGCTCATAGAGGACCTGTGGTGCAGAGGGATCAAAGGAAGATATTGTTTAACAGTGAAGATGGAAAAATCTCTGCCACTAATGTCAAAGATGGACAAAACACACCACCTTATCATCTTCAGTTCTTTACATTGGAACCTAACTCTGTGTTTCTTCCTGTGCTTCTACATGCCGCTATGGTCTTTTATGTTCATACAGGGAGTGGAAAGCTGACATGGGCAAATGAAGATGGTACTGGTACAATGGATATACATGAAGGAGATGTATGTAGCCTTAGAGAAGGATCTGTTTTCTATATACACAGCAACTTGGAATCACACAGGAAGAAACTGAGGATATATGCAATGTTTACTAATACTGATGAAAGCACTTTTGATCCATCAATTGGTGCTTACTCGAGGGTCAATGAACTAGTCAAAGGCTTTGATAAGAATATCATTCAAGCAGCTTTTAAGGTGCCGGAAGATTTGGCTGAGGCAATCACAGACAACAGAGAGGCACCAGCAATAGTGCATGCAGTTCCAGTGAAGAAGCATAACAATGTCTTGGAATTGGAGAATTCATTTCTAAAATACTTAAGAGGCATTCAATCCAACTCCAAGAAGCTCAAAGTATACAACATCTTTGATAATGATCCTGACTTCAGAGATGACTATGGTTGGACCTCAACAGTGACCAAAAAGCAAGTCAAAGAATTACAGCATCACAACATTGGATTTTTCATGGTGAATTTGAACCCGGGATCAATATTGGCGCCACATTGGAATCCATTGGCAGCAGAAATAGCAGTGGTGTTGCAGGGGGAAGGTATGGTAAGAATAGTATGTGGAAGCAACAATGATCATGAATGTGAAAACAAGAGGTTTAGAGTTAAGCAAGGAGATGTTTTTGTGGTGCCTAGATTTCATGTAATGGCTCAAATGTCATTTGCTAGAGGGCCACTTGTTTTTATGGGATTCAGCACTGCTGCAAAGAAAAATCATCCTCAGTTTTTGGCTGGTAAAGGATCAGTGCTTCAAACTCTAGACAAACAGATAGTTGCTACATCTTTAGGTGTAAACAAAGCAGCCATTGACAAGCTTTTGGATGATCCAGTTGATTCGATCATTTTCGGGTGTAGTTCTTGCGCAGAGGAAGAGGAGAGATTAATGGAGGTAGAAGAGGAGGAGGAAAGGGAGGAGGAGGAGAAGAGGAGGAAAGAGGAAGAAGAGGAAGAAGAAAAAGAGAGGGAAAGAAGAGAAAAAGAGGAAGAAAAAGAGAGGGAAAGAAGAGAAAAAGAGGAAGAAGAGAAGAGAGAGGAGGAAGAAAAAGCGAGGGAAAGAAGAAGAAAAAGAGAAGAGGAGGAGGAAGAAAGGAAAAGTGAGGAAGAAGCAGCTAGAAGACAACAAGCAGAGAGGGAAAGGAGAAGAGAAGAGAAGGAAGCAAAGAGAGAGGAAGAGGCAAGGAGGAGAGAAGAGGCGGCAAGAAGAGAGGAAAAGGTAAGGAGGGAGCAAGAAGAAGTTAGAAGAGAGAAAGAAGAAGCTAGAAAACAAGAGCAGAAAGAGAGGGAAAGAGAAGAGGAAGCTGTGAGAGAAAAGGAAGAGGCAGAGAGGGAGCAAGAAGCAGCTAGAAAGCAAAAGAAAGAGGAGAAGAAGAGGGAAGAGGAAGCTGTGAGAGAAAAGGAAGAGGCAGAGAGGGAGCAAGAAGCCGCTAGAAAACAAAAGGAGGAGGAGAAGAAGAGGGAAGAGGAAGCTGAGAGAGAAAAGGAAGAGGCAGAGAGGGAGCAAGAAGCCGCTAGAAAACAAAAGGAGGAGGAGAAGAAGAGGGAAGAGGAAGCTGAGAGAGAAAAGGAAGAGGCAGAAAGGGAGCAAGAAGCGGCTAGAAAACAAAAGGAGGAGGAGAGGGAAAGAGAAAAGGAAGCAGAAGCAGAAGCTGGAGAAAAAGCTAGAGAACAGAAAGAAAAGAGAGAAGCAGCTAAAAGAGAACAAGAGAAGAGGGAAAAGAAAGAGGAGGAAGAAATGGAACTGGAAAGGGAAAAGGAAAGGAAGAGAGAAGAGGCAGAGAGAGAGGAAGAAGCAGCTAGAAAAGCAGCTAGAAAAGAACAAGAGAAGAGGGAAAGGAAAAGAGAAGAGAAGGAAGCTAGGAGAGAGGAAGTGAGGAGAAAAAAAGAGACAACGGAATGGGAATGGGAAGAAGAAGAAGCAGCCAGAAGGCAACAAGAAGAAAGGGAGAAGAAAAGAGAGCAAGACAGTGGGAGTAGCTTTGAAGGAAGAAGAATTCTGAAGATTAGTAAGATTGTGTGA 2388 0.4263 METRKTLSPSLLIFFLITISLCQSKALSSEEHSTVKAHRGPVVQRDQRKILFNSEDGKISATNVKDGQNTPPYHLQFFTLEPNSVFLPVLLHAAMVFYVHTGSGKLTWANEDGTGTMDIHEGDVCSLREGSVFYIHSNLESHRKKLRIYAMFTNTDESTFDPSIGAYSRVNELVKGFDKNIIQAAFKVPEDLAEAITDNREAPAIVHAVPVKKHNNVLELENSFLKYLRGIQSNSKKLKVYNIFDNDPDFRDDYGWTSTVTKKQVKELQHHNIGFFMVNLNPGSILAPHWNPLAAEIAVVLQGEGMVRIVCGSNNDHECENKRFRVKQGDVFVVPRFHVMAQMSFARGPLVFMGFSTAAKKNHPQFLAGKGSVLQTLDKQIVATSLGVNKAAIDKLLDDPVDSIIFGCSSCAEEEERLMEVEEEEEREEEEKRRKEEEEEEEKERERREKEEEKERERREKEEEEKREEEEKARERRRKREEEEEERKSEEEAARRQQAERERRREEKEAKREEEARRREEAARREEKVRREQEEVRREKEEARKQEQKEREREEEAVREKEEAEREQEAARKQKKEEKKREEEAVREKEEAEREQEAARKQKEEEKKREEEAEREKEEAEREQEAARKQKEEEKKREEEAEREKEEAEREQEAARKQKEEEREREKEAEAEAGEKAREQKEKREAAKREQEKREKKEEEEMELEREKERKREEAEREEEAARKAARKEQEKRERKREEKEARREEVRRKKETTEWEWEEEEAARRQQEEREKKREQDSGSSFEGRRILKISKIV 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06907 795 PANTHER OS03G0336100 PROTEIN-RELATED 11 411 - -
Vifa1g06907 795 MobiDBLite consensus disorder prediction 416 795 - -
Vifa1g06907 795 SMART Cupin_1_3 241 394 IPR006045 -
Vifa1g06907 795 Gene3D Jelly Rolls 36 216 IPR014710 -
Vifa1g06907 795 Coils Coil 411 757 - -
Vifa1g06907 795 Pfam Cupin 47 188 IPR006045 -
Vifa1g06907 795 Pfam Cupin 241 391 IPR006045 -
Vifa1g06907 795 Coils Coil 759 779 - -
Vifa1g06907 795 CDD cupin_7S_vicilin-like_C 248 403 - -
Vifa1g06907 795 CDD cupin_7S_vicilin-like_N 51 210 - -
Vifa1g06907 795 Gene3D Jelly Rolls 231 407 IPR014710 -
Vifa1g06907 795 MobiDBLite consensus disorder prediction 428 783 - -
Vifa1g06907 795 SUPERFAMILY RmlC-like cupins 38 397 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06907 Vifa-Chr1 1064901379 1064904138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06907 12 419 Miscellaneous Gene Families AT2G18540 42.627 1.03e-103 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06907 - - tpra:123911070 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06907 1 1064901379 1064904138 Vifa1g06907 1 1064901379 1064904138 ECH