Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06856 ATGTGGCGCTGCGTCGCTCGTGGACTCCGCGTTCCACAATCTCACAGATCCAATAACTCTCTCGGATCTCACTTTTCCAGATTCTTCTCTAGTGGTGTAAACTCGTCTTACACTGTGGTAGATCATACTTACGATGCAGTTGTGGTGGGTGCTGGTGGTGCTGGTTTGAGAGCTGCTATTGGACTTTCTGAACATGGATTCAATACTGCTTGTATTACTAAGCTTTTTCCAACTCGTTCACATACTGTTGCAGCTCAGGGTGGCATAAATGCAGCATTGGGAAATATGAGTGAAGATGACTGGAGGTGGCACATGTATGACACTGTAAAAGGAAGTGATTGGCTAGGAGATCAGGATGCCATCCAATATATGTGTAGGGAAGCGCCAAAAGCGGTTATTGAACTAGAGAATTACGGGTTGCCTTTTTCTCGAACAGAGGAGGGAAAAATATATCAGCGCGCATTTGGTGGCCAGAGCTTAAACTTTGGAAAAGGTGGTCAAGCTTACCGTTGTGCATGTGCTGCTGATCGAACTGGGCATGCTTTATTGCATACTCTCTATGGCCAGGCTATGAGACACAATACACAGTTTTTTGTGGAATATTTTGCTTTGGATCTTTTAATGAATAGTGATGGTACTTGCCAAGGAGTGATTGCCTTAAATATGGAGGATGGGACACTACATCGATTCCAAGCTGCTTCAACAATTTTGGCCACAGGGGGTTATGGTAGGGCATACTTCTCAGCAACCTCAGCACATACATGCACTGGAGATGGAAATGCCATGGCTGCACGTGCTGGGATCGGGCTTGAGGATTTAGAGTTTGTGCAATTTCACCCAACCGGTATATATGGAGCAGGTTGCCTCATAACAGAAGGCTCTCGCGGTGAAGGTGGAATTCTTAGGAATAGCGAGGGGGAGCGGTTTATGGAACGATATGCTCCTACAGCAAAGGATCTTGCTTCCAGAGATGTTGTTTCACGATCAATGACTATGGAGATCCGGGAAGGTCGTGGTGTAGGACCCCTGAAGGATCATATCTATCTACACTTGAATCATCTACCCCCAGATGTGCTCAAGGAGAGACTACCTGGTATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATCCCTGTTTTGCCAACTGTGCATTATAACATGGGTGGCATTCCCACAAATCATCATGGAGAGGTGGTTACCATTAAAGGCGACGATCCAGATGCATTAGTTCCAGGATTGATGGCTGCTGGAGAAGCAGCCTGTGCATCAGTTCATGGAGCCAACAGGCTTGGTGCAAATTCACTTTTGGATATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATTAATAGGCCAGGACAGAAACAAAAGCCTTTAGAGAAGGATGCTGGCCAGAAAACAATTGCATGGTTGGACAAATTGAGAAATTCAAATGGTTCATTACATACTTCAAAAATTCGGTTGAATATGCAACGAGTAATGCAAAGTAATGCTGCTGTATTCCGTACACAAGAAACCTTAGAAGAAGGTTGTCAATTAATTGATAAAACGTGGGAGAGTTTCCACGATGTCAAGGTTGAGGACCGGAGTTTAATATGGAACTCCGACTTGATCGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCCTGCATCACAATGCACTCTGCAGAAGCCAGGAAAGAGAGTAGAGGAGCTCATGCTCGCGAGGACTTCACGACAAGAGACGATGAGAAGTGGATGAAACACACTTTGGGATTCTGGGAGAACGAGAAGGTCCGATTGGATTACCGGCCGGTGCATTTGAACACATTGGATGATGAGGTTGAGTCATTCCCTCCTAAAGCTCGTGTGTATTAA 1887 0.4489 MWRCVARGLRVPQSHRSNNSLGSHFSRFFSSGVNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGTCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMAARAGIGLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDALVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEINRPGQKQKPLEKDAGQKTIAWLDKLRNSNGSLHTSKIRLNMQRVMQSNAAVFRTQETLEEGCQLIDKTWESFHDVKVEDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTTRDDEKWMKHTLGFWENEKVRLDYRPVHLNTLDDEVESFPPKARVY 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06856 628 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 29 628 IPR030664 -
Vifa1g06856 628 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 283 386 - -
Vifa1g06856 628 Pfam Fumarate reductase flavoprotein C-term 497 628 IPR015939 GO:0016491
Vifa1g06856 628 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 273 391 IPR027477 -
Vifa1g06856 628 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 79 88 IPR003952 GO:0016491
Vifa1g06856 628 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 387 452 - -
Vifa1g06856 628 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 33 264 - -
Vifa1g06856 628 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 283 386 IPR027477 -
Vifa1g06856 628 NCBIfam succinate dehydrogenase flavoprotein subunit 42 628 IPR011281 GO:0006099|GO:0016627|GO:0050660
Vifa1g06856 628 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 45 628 IPR014006 GO:0016627|GO:0022900|GO:0050660
Vifa1g06856 628 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 487 628 IPR037099 GO:0016491
Vifa1g06856 628 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 580 628 - -
Vifa1g06856 628 PIRSF SDHA_APRA_LASPO 34 617 - -
Vifa1g06856 628 Gene3D - 468 578 - -
Vifa1g06856 628 Gene3D - 45 452 IPR036188 -
Vifa1g06856 628 Gene3D succinate dehydrogenase protein domain 579 628 - -
Vifa1g06856 628 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 467 583 - -
Vifa1g06856 628 SUPERFAMILY FAD/NAD(P)-binding domain 36 463 IPR036188 -
Vifa1g06856 628 Pfam FAD binding domain 45 441 IPR003953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06856 Vifa-Chr1 1056445629 1056452491 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06856 K00234 - gmx:100803020 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06856 1 1056445629 1056452491 Vifa1g06856 1 1056445629 1056452491 ECH
Vifa1g06856 1 1056445629 1056452491 Vifa4g02473 4 744227577 744232002 PCT