Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06844 ATGGTGCACAGTGCATACGACTGTTTAGAACTAGTTCCCAATTTCAACGGCAAGATCGAAGCAATCGAATCCTACGGTTCTAAACTTCTACTCAGTTGCTCCGATGGATCTCTCCGAATTTACGCGCCGGAAACTAATTCCTCCGATCGTTCTAAACCCTACGTGCTCGAGAAGAACTATGCTGGTTTTGCGAAGAAGCCTGTTGTGTCAATGGAAGTTGTGGAATCTAGAGAGCTTCTTTTATCGCTCTCTGAATCCATCGCGTTTCATAGACTCTCGAATTTGGAAACTATAGCGGTTATCACCAAAGCTAAGGGCGCTAACGTCTTTTGCTGGGATGATCGGAGAGGTTTTCTTTGCTTTGGGAGGCAAAAGCGCGTTTGCATTTTCAGACACGATGGTGGTAGGGGATTTGTTGAGGTGAAAGAGTTTGGTGTACCGGATGTGGTGAAGTCCATCAGTTGGTGTGGGGAGAATATCTGTTTGGGGTTTAGAAGAGAATATGTGATTTTGAATGCTTCAAATGGTGCTTTGTCTGAGGTTTTTACTTCGGGGAGACTAGCGCCGCCTTTAGTAGTGCCTCTTCCGTCTGGTGAGCTGCTTCTTGGAAAGGAGAATATTGGGGTTTTTGTGGATCAAAATGGGAAACTTATTCCTGAAGGCAGAATTTGTTGGTCAGAGGCACCCTTGGAAGTTGTGATTCAGAAGCCATATGCTATTGCTTTGCTTCCCAGATTTGTGGAGATTAGATCTCTTCGACAACCTTATCCGTTGATACAAACTATTGTTCTTCGCAATGTTCGTCATCTTTGCCAAAGCAGTAATTCCGTGATACTTGCTTTGGATAATTCTATTCAAGGTCTCTTCCCTGTTCCTCTTGGAGCCCAGATTGTCCAACTAACTGCATCTGGCAATTTTGAAGAGGCCTTGTCATTGTGCAAGCTCCTTCCACCCGAAGATTCAAGTCTTCGTGCTGCAAAGGAGGGATCAATTCATATGAGATATGCCCACTATCTTTTTGATAATGGAAGCTATGAGGAGGCTATGGAACATTTTCTGTCGGCTCAAGTGGATATAACCTATGTGCTTTCTCTTTATCCATCCATTGTCCTTCCAAAGACAACTGTTGTTCATGAGCCAGAGAAGTTGGACATTGAAAGGGATGCTTCCTATCTCTCCAGTGTTTCAGATGATATGGAACCCTCACCATCTGACGAGAATGCAGCGCTAGAATCCAAAAAAACAAACCATAATATGCTCATGGCTCTCATAAAATATTTACAGAAGAAAAGAGGTTATTTTGTTGAGAAGGCTACTTCAGAGGGAACTGAAGAAGTTGTTTTAGATGCAGTTGGGGATAACTTTGCATCCTACAATAGGTTTAGAAAAGCAAACAAGGGACGTGGTATTGTATCGGTTAGTTCTGGAGCTCGGGAGATGGCTTCAATATTGGATACTGCTCTGCTCCAAGCATTGCTTCTTACTGGACAATCTTCAGCGGCTTTAGAATTGCTTAGAGAACTTTACAAGTGCAAGTCATTGCACCGGCAAGCTCTTGAACTTCTTCACAAGTTGGTGGAAGAGTCAAGATCCAGCCAGTCTGAAATTACACAAAGGTTCAAGCCTGAGGACATTGTTGAGTATCTCAAGCCGCTATGCGGGACAGACCCCATACTTGTTCTGGAATTCTCAATGCTTGTTCTTGAAAGCTGTCCATCCCAAACTATTGAGCTCTTTCTTTCTGGAAATATACCAGCAGACATGGTGAACTCATACTTGAAGCAGCACTCTCCAAACATGCAAGCTAGGTACCTGGAACTCATGCTTGCAATGAATGAGAATGCCATATCTGGCAATCTGCAAAATGAAATGGTAAACATCTACCTATCTGAAGTACTTGAGTGGCATGCTGACTTAGATGCTCAACAAAATTGGGACGAGAAAACTTTTACCCCAACAAGGAAAAAGTTACTGTCAGCTTTAGAAGGTATATCAGAATACAATCCAGGGGCTCTGCTGAAACGTCTACCTCAAGAGGCTTTATACGAAGAACGGGCATTGTTGTTAGGAAAAATGAACCAACATGAACTGGCATTATCTCTGTATGTTCATAAGCTTCATGTTCCAGAATTGGCATTATCTTATTGTGATCGGGTGTATTCGCATCAGCCATCTCTAAAAAGTTCTAGCAACATATACCTATTGCTAATGCAAATCTATTTGAATCCTCGAAAGACCACTGCTAGCTTTGAAATGAGAATTGCCAATCTATTATCCCCGCAAAGTACATCCATTTCTAGAGCTAGTGCAACATCGATAAAAAGCAAAGGAGGCCGGGGAACAAAGAAAATTGCTGAGATTGAGGGTGCAGAGGGCACAAAAGTTAGTTTGAGCAGCACTGACAGTAGCAGGAGTGATGAAGATACGGATGAAAATGAGGGTGGCTCTACTATCATGCTTGATGAGGTTCTTGATCTGTTGAGCCGCAGGTGGGATAGAATAAATGGAGCTCAGGCCCTTAAACTTTTACCCAGAGAGACTAAGTTACAGGATTTGCTATCATTTCTTGGGCCTCTTTTGAGAAAATCTAGTGAAATGTACCGTAACTGTTCAGTGATAAGGAGCTTGAGACAGAGTGAGAATCTTCAGGTGAAAGATGAACTGTATAGTCAGAGGAAAGGAGTTGTGAAGATAACCAGTGATAGCACGTGTTCTATGTGCCGAAAGAAAATAGGGACTAGTGTTTTTGCTGTCTACCCCAATGGGAGCACTCTCGTGCACTTTGTCTGTTTTAAAGATTCTCAAAATATGAAAGCAGTGACCAAAGGGTCTCAATTGAGGAAGCGATAA 2850 0.4267 MVHSAYDCLELVPNFNGKIEAIESYGSKLLLSCSDGSLRIYAPETNSSDRSKPYVLEKNYAGFAKKPVVSMEVVESRELLLSLSESIAFHRLSNLETIAVITKAKGANVFCWDDRRGFLCFGRQKRVCIFRHDGGRGFVEVKEFGVPDVVKSISWCGENICLGFRREYVILNASNGALSEVFTSGRLAPPLVVPLPSGELLLGKENIGVFVDQNGKLIPEGRICWSEAPLEVVIQKPYAIALLPRFVEIRSLRQPYPLIQTIVLRNVRHLCQSSNSVILALDNSIQGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKEGSIHMRYAHYLFDNGSYEEAMEHFLSAQVDITYVLSLYPSIVLPKTTVVHEPEKLDIERDASYLSSVSDDMEPSPSDENAALESKKTNHNMLMALIKYLQKKRGYFVEKATSEGTEEVVLDAVGDNFASYNRFRKANKGRGIVSVSSGAREMASILDTALLQALLLTGQSSAALELLRELYKCKSLHRQALELLHKLVEESRSSQSEITQRFKPEDIVEYLKPLCGTDPILVLEFSMLVLESCPSQTIELFLSGNIPADMVNSYLKQHSPNMQARYLELMLAMNENAISGNLQNEMVNIYLSEVLEWHADLDAQQNWDEKTFTPTRKKLLSALEGISEYNPGALLKRLPQEALYEERALLLGKMNQHELALSLYVHKLHVPELALSYCDRVYSHQPSLKSSSNIYLLLMQIYLNPRKTTASFEMRIANLLSPQSTSISRASATSIKSKGGRGTKKIAEIEGAEGTKVSLSSTDSSRSDEDTDENEGGSTIMLDEVLDLLSRRWDRINGAQALKLLPRETKLQDLLSFLGPLLRKSSEMYRNCSVIRSLRQSENLQVKDELYSQRKGVVKITSDSTCSMCRKKIGTSVFAVYPNGSTLVHFVCFKDSQNMKAVTKGSQLRKR 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06844 949 ProSiteProfiles Citron homology (CNH) domain profile. 16 277 IPR001180 -
Vifa1g06844 949 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 563 748 IPR000547 GO:0006886|GO:0016192
Vifa1g06844 949 PANTHER CNH DOMAIN CONTAINING 2 938 IPR032914 GO:0016192
Vifa1g06844 949 SUPERFAMILY WD40 repeat-like 25 171 IPR036322 GO:0005515
Vifa1g06844 949 Pfam Vacuolar sorting protein 39 domain 1 505 568 IPR019452 -
Vifa1g06844 949 MobiDBLite consensus disorder prediction 791 815 - -
Vifa1g06844 949 Pfam Region in Clathrin and VPS 588 719 IPR000547 GO:0006886|GO:0016192
Vifa1g06844 949 Pfam Vacuolar sorting protein 39 domain 2 824 932 IPR019453 -
Vifa1g06844 949 Pfam CNH domain 26 272 IPR001180 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06844 Vifa-Chr1 1054769997 1054776205 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06844 K20183 - gmx:100805342 1530
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06844 1 1054769997 1054776205 Vifa1g06844 1 1054769997 1054776205 ECH