Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06833 ATGGATTCAATGGAGTTTAAACTGAGTGAACTACTGAAAGAAGTTCAAGTAGATTACTCTCCTCACTTTTCTAAACTCGTAGACGATACCGTCTCCTCCATCAAATCTTCCATTGATAAAATCCCTGAAAACTATAAGGTTAATGCTGATTTGGCACCGGGTTTTGTTAAGGACATTGGTGCTGATAAGGTGGAGTTCAAATTTAAGAAGCCTTCGGTTTTTAAGTTTGGTGGTAGTTACTCCATACAAAGTCTTGGTAGGCCTGAATTAAATGTGGACCTTATTATAAGGTTACCAAAGGAGTGCTTCCATGAGAAGGATTATTTGAACTATAGATACCATGCCAAGAGGTGTCTTTATCTCTGCTTGCTAAAGAAGTATTTGGAGAAGTCTTCATCTATTGCTAGGGTTGAATGGTCTACCATGCAGAACGAAGCTCGAAAGCCTTTACTGATTGTGTATCCGGCTGCAAAGCTTGTTGATGCTGATGGTTTTTATGTGAGAATTATTCCGTCGGCCATGTCTATCTTTAGCATATCGAAGTTAAACATGACACGTAATAACATTCATAATTCGAACAATGGGAGTTCTGTTCAAGCAACACCGAAGTATAATTCTAGTATCTTGGAAGACATGTTTATAGAGGATACAGAATTAATGAACAAACTTTTTCTTGGCTGGAAGGAACTAAGAGAAGCTTTAATCCTACTGAAGGTATGGGCTCGACAGAGAAGTTCAATATATGCTCATGATTGCCTGAATGGATTTTTGATATCCATCATACTCGCACATCTTGCTTCCAGGGAACAAATTAAGAAGTCAATGAAGGTCATTGAAATAATTCGCATTACTTTGAACTTCCTTGCCACTTCAGAGACTTGGAGCCGAGGTGTCTACTTTCCAAAGGAAGGCCAGGGAAATATTACTAAAGAGGAAAGGATGCAACTAAAAGGGTCATTTCCAATTGTGATATGTCATCCTTCGGGGGCATTCAATTTGGCTTTTCGAATGTCTAGGGTTGGTTTTACCCAGCTTCAAGACGAGGCTGCTACGACACTTAAATGCATGGAAAAGTGTAGAGGTGGTGGATTTGAAGAAGTTTTTATGACCAAGATTGACTATGCTGTTAAATATGATTATTTTATGAGAATAAACTTTAAAGGAAACAAAGAGCTATATGCATCAGGAATTTGTTTGGATGATGAATGCTGGAGATTGTATGAGGAGAAAATACATGCTATATTAGCTAAAGGATTGGGTGATAGAGCAAAATTCATTCGAGTTATATGGAGAAATGCAGAATGTCAGTGGCGCGTGGATGATGGCTTGTCCATACTTGATAAAGAGCCCTTGTTCATAGGAATTTCAGTCAGTAATTTGGAGAAAGCATATAGGATGGTTGATATTGGTCCAAATGCTGAGAGTAAAGAAGAGGCTCGTGAATTTCGAAAGTTTTGGGGAGAAAAAGCAGAGCTGAGAAGATTTAAAGACAGTAGAATTGCAGAAAGCACAGTATGGGAATGTCAGAAATGGGAAAGGCATCTGATTTTGAAAACTATAGCCGAGCATGTTCTTAGTCTGCATCTATCTCTACCCAAGGACAATATCGTAGTAGTTGTGGATCAACTTGATTTTTCTTTGGCTCATGGTGCTGCAGACCCTATATCATACTCTGGAAGTTTGCTCGAGGCATTTGATGTTCTATCAAAACGTTTGCGTCTTATTGAGAACCTCCCTTTGAAGGTGTCTAGTGTACAACCTTTAGACTCTGCATTCAGGTTTACATCAGTCTTCCCTCCCGAACCTCATCTACTAGCTAATGAAAAGATTGGAACTTTCAGACTGAATAAGTTGGTTTCATCATGCATTCAACCACTAGAAATAATGATTCAGTTGGAAGGTTCTGGGAACTGGCCAATGGATGAAACTGCAATTGAAAAAATAAAATCTAGTTTCCTTATTCAAATTGGAGAAAGTCTTCAAAAGAAGTGGGGGATGACATGCACTGCAACTCAGGATGATGTGGATGTATTAATGTCAGGATATGCATTTCGTCTTAAACTTTTGCATGAGAGGGCCCTTAGTCTACTCAAAGAAATTGGGAATGATAAAAAAATACGGGTACATTCTGCAGACAAGACACTTTTGATTCGTAGTCAACATGCTAGCATGATAAATGGACTACAAAGTCTTTACCCAATTTATGGACCAGTAGTTAGACTAGCGAAACGTTGGGCTGCTTCACATCTATTTTCTGCTTGTTTGGTAGAGGAGGCCATTGAACTATTGGTTGCATATCTCTTTCTCAATCCTTTGCCATTTGAAGCTCCCTGCTCACGGATCACTGGATTTTTAAGATTCCTGCAGTTGCTCTCAGACTATGATTGGACTTTTTCTCCCTTGGTTGTTGACATCAATAATGACTTAAGCCAAAGTGATGTAAAAGAAATAAATGATAACTTTTTGCTACAAAGAAAAGGCCAGGGAGAGAATGGGCAAAATGTAGGGCCGGTGATGTTCTTGGCTACAGTTTATGATAAAGCATCTGAGGCCTGGACTGGATTATCACCTAGTGCACTGGAACTTAAAAGATTAGTTGCATATGCCCGAAGCAGTGCAAATTTGCTGAGGAAACTCACATCTCAGGAGGAGATTGGTCCAAATAGATGGGAGTGCCTTTTACGAACTCCTTTGAACAACTATGATGCACTCATTATTCTCCACAAGGACAAACTTGCGTATCCTCGAAGGCTCCTCTTCTCATCAGAAATTGGTCACGGAACCCAAGTTGCTAAAGGACATGCTAGCAAGTGCTTCCAACCCTTTTTGTTGCCTAAAGATTTGAAGGGTAGGCCAGAGGAACTTAAAAAGAAGTTGCTGGTTGACTTCGATCCATCAAGGTGCTTTATCAAAGATTTAGAGAAAGAGTTTTCCACCACATTCAAGTTATGGCATGATTCTCTAGGAGGTGATGTCATCGGTCTAACATGGGGGAAACCGTGTCCTTCCAAGAAGCGGAAACAAGATGAAGTGGTTGATGAAGGATATGACCCTAGGAAGGTGCTAAAAGCAGTAGGTGAAGTTGGAAAAGGGTTTGTTAGGAGTATATATTTTATCAAGCCACCAAGGCTTGCAAACTAA 3141 0.397 MDSMEFKLSELLKEVQVDYSPHFSKLVDDTVSSIKSSIDKIPENYKVNADLAPGFVKDIGADKVEFKFKKPSVFKFGGSYSIQSLGRPELNVDLIIRLPKECFHEKDYLNYRYHAKRCLYLCLLKKYLEKSSSIARVEWSTMQNEARKPLLIVYPAAKLVDADGFYVRIIPSAMSIFSISKLNMTRNNIHNSNNGSSVQATPKYNSSILEDMFIEDTELMNKLFLGWKELREALILLKVWARQRSSIYAHDCLNGFLISIILAHLASREQIKKSMKVIEIIRITLNFLATSETWSRGVYFPKEGQGNITKEERMQLKGSFPIVICHPSGAFNLAFRMSRVGFTQLQDEAATTLKCMEKCRGGGFEEVFMTKIDYAVKYDYFMRINFKGNKELYASGICLDDECWRLYEEKIHAILAKGLGDRAKFIRVIWRNAECQWRVDDGLSILDKEPLFIGISVSNLEKAYRMVDIGPNAESKEEAREFRKFWGEKAELRRFKDSRIAESTVWECQKWERHLILKTIAEHVLSLHLSLPKDNIVVVVDQLDFSLAHGAADPISYSGSLLEAFDVLSKRLRLIENLPLKVSSVQPLDSAFRFTSVFPPEPHLLANEKIGTFRLNKLVSSCIQPLEIMIQLEGSGNWPMDETAIEKIKSSFLIQIGESLQKKWGMTCTATQDDVDVLMSGYAFRLKLLHERALSLLKEIGNDKKIRVHSADKTLLIRSQHASMINGLQSLYPIYGPVVRLAKRWAASHLFSACLVEEAIELLVAYLFLNPLPFEAPCSRITGFLRFLQLLSDYDWTFSPLVVDINNDLSQSDVKEINDNFLLQRKGQGENGQNVGPVMFLATVYDKASEAWTGLSPSALELKRLVAYARSSANLLRKLTSQEEIGPNRWECLLRTPLNNYDALIILHKDKLAYPRRLLFSSEIGHGTQVAKGHASKCFQPFLLPKDLKGRPEELKKKLLVDFDPSRCFIKDLEKEFSTTFKLWHDSLGGDVIGLTWGKPCPSKKRKQDEVVDEGYDPRKVLKAVGEVGKGFVRSIYFIKPPRLAN 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06833 1046 Pfam Nrap protein domain 1 92 216 IPR035082 -
Vifa1g06833 1046 Pfam Nrap protein domain 3 375 529 IPR035368 -
Vifa1g06833 1046 Pfam Nrap protein PAP/OAS1-like domain 5 732 884 IPR035370 -
Vifa1g06833 1046 Pfam Nrap protein domain 6 898 1036 IPR035371 -
Vifa1g06833 1046 FunFam Nucleolar protein 6 204 374 - -
Vifa1g06833 1046 Gene3D - 207 374 - -
Vifa1g06833 1046 PANTHER NUCLEOLAR RNA-ASSOCIATED PROTEIN 2 1037 IPR005554 -
Vifa1g06833 1046 Pfam Nrap protein PAP/OAS-like domain 230 371 IPR035367 -
Vifa1g06833 1046 Pfam Nrap protein nucleotidyltransferase domain 4 558 729 IPR035369 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06833 K14544 - gmx:100776157 1710.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06833 1 1053813961 1053822023 Vifa1g06833 1 1053813961 1053822023 ECH