Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06803 ATGTCCGCCGCTAAATTAACCTCATGCGTCGCCGCAACAGCAGCCGCAGTGGCTTCAATGTCCACTCGCTCCGATCCCGCTTACTCTGAATCTTTCTTCCGATTCCCTTTTTTCTCTTCTTCACCTTCCAATTCACCTTCACCGACGAACCAATCACCTGACACCAAGTCAGAATCTCCACCGTCCGAGGAACCTAACAAGTCCGGTTTTGATCCTGAATCGTTAGAAAAAGCTGCCAAATCTCTCCGTGAAATCAATAATTCACCCTACTCTAAACAGGTGTTTGATTTAATGCGAGAACAGGAAAAATCTCGACTTGCTGAGCTAGATGCTGAGAAAGTTTATTATGAACTTATTCAGTCTCAAGGAGATATTGACAGGCTGCGTAAAATGGCTGAAGAACAACGCAATCTAATACAAGAGCAGAACCAGAGGCAGGCTCAGGTGTTGCGATTTGAAGATGAATTAGCAAGGAAAAGAATGCAGACAGATCATGAAAATCAACGGCAACATAATGTTGAGTTGGTCAAGATGCAAGAGGATTCTTTTGTAAGAAAGGAGCAAGCAAGACAGGCTACTGAAGAACAAAATCAATCTCAGAAGCGTCAGACTGAGAGAGAGCGTGCTGAAATAGAAAGAGAAACCATAAGAGTTAAGAAAATGGCAGAGGCTGAAGCCCGAGCCCATGAAGCAAAATTGACTGAGGATCATAACAGGAGAATGCTTATAGATCGAATGCATGGGGAAAGAGATAAATGGCTTGCTGCAATTAACACTACTTTTAGTCATATTGAAGGTGGTCTAAGGATTTTATTGACTGATAGGGACAAACTGATTATGACTGTTGGAGGAGCAACTGCATTAGCTGCAGGAGTATATACAACAAGAGAAGGTGCAAAAGTTACATGGGGCTATATTAATCGAATTTTGGGGCAGCCTTCATTGATCCGGGAGTCATCCATGGCAAAGTTTCCAGGATCAAGGATCATGTCTCAAGCCAAAAATAAAGTTTTAAATTATAGTACCTTGGCCAGGGCAGAGAAGCCTGTTGGGAGTCAAAATGGTCTTGGAAATGTAATCTTGCATCCATCATTGCAGAGAAGAATAGTACATCTAGCACGGGCAACATCAAATACCAAGGCCCATCAGGCACCATTTCGTAACATGCTTTTTTATGGTCCTCCTGGGACTGGTAAAACCATGGTTGCAAGAGAAATAGCTAGAAAATCGGGTTTGGATTATGCAATGATGACCGGAGGAGATGTTGCACCTCTGGGCCCACAGGCTGTTACCAAAATTCATGAGATATTTGATTGGGCCAAGAAATCTAAAAGAGGCCTATTGCTTTTTATTGATGAGGCAGATGCTTTCCTTTGCGAGCGTAACAGCTCATATATGAGTGAAGCTCAACGGAGTGCCCTAAATGCGTTGCTTTTCAGAACTGGCGATCAGTCTAGAGACATAGTACTTGTCCTTGCCACAAACAGACCAGGAGATCTTGATAGTGCAATTACTGATCGCATTGATGAAGTGATTGAATTTCCGCTTCCAGGAGAGGAGGAACGATTTAAGTTATTGCAGCTCTATTTGAACAAGTATCTATGTGATGACAGTAACGACTCCAAGGGGGGCTTATTTTTGAAGAAGCAGCCTCAGAAGATAACCATAAAAGATTTATCTGAAGATGTGCTGAAAGAAGCTGCAAAGAAAACAGAAGGATTTTCTGGCCGTGAGATAGCCAAACTCATGGCCAGTGTCCAAGCTGCTGTCTATGGACGCCCTGACTGCGCCTTGGATTCTCAGCTGTTTAAAGAACTTGTAGATTACAAGGTGGTTGAACATCATCAGCGATTAAAACTAGCAGCTGAAGGCAGCCTCCCTGCGTGA 1887 0.4324 MSAAKLTSCVAATAAAVASMSTRSDPAYSESFFRFPFFSSSPSNSPSPTNQSPDTKSESPPSEEPNKSGFDPESLEKAAKSLREINNSPYSKQVFDLMREQEKSRLAELDAEKVYYELIQSQGDIDRLRKMAEEQRNLIQEQNQRQAQVLRFEDELARKRMQTDHENQRQHNVELVKMQEDSFVRKEQARQATEEQNQSQKRQTERERAEIERETIRVKKMAEAEARAHEAKLTEDHNRRMLIDRMHGERDKWLAAINTTFSHIEGGLRILLTDRDKLIMTVGGATALAAGVYTTREGAKVTWGYINRILGQPSLIRESSMAKFPGSRIMSQAKNKVLNYSTLARAEKPVGSQNGLGNVILHPSLQRRIVHLARATSNTKAHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGPQAVTKIHEIFDWAKKSKRGLLLFIDEADAFLCERNSSYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPGEEERFKLLQLYLNKYLCDDSNDSKGGLFLKKQPQKITIKDLSEDVLKEAAKKTEGFSGREIAKLMASVQAAVYGRPDCALDSQLFKELVDYKVVEHHQRLKLAAEGSLPA 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06803 628 ProSitePatterns AAA-protein family signature. 488 507 IPR003960 GO:0005524|GO:0016887
Vifa1g06803 628 Coils Coil 125 145 - -
Vifa1g06803 628 SMART AAA_5 385 518 IPR003593 GO:0016887
Vifa1g06803 628 MobiDBLite consensus disorder prediction 162 210 - -
Vifa1g06803 628 MobiDBLite consensus disorder prediction 39 64 - -
Vifa1g06803 628 FunFam ATPase family AAA domain-containing protein 3 343 533 - -
Vifa1g06803 628 PANTHER PUTATIVE ATP-ASE 20 623 - -
Vifa1g06803 628 MobiDBLite consensus disorder prediction 162 192 - -
Vifa1g06803 628 Pfam ATPase family AAA domain-containing protein 3, N-terminal 54 317 IPR021911 -
Vifa1g06803 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 611 IPR027417 -
Vifa1g06803 628 Coils Coil 183 214 - -
Vifa1g06803 628 MobiDBLite consensus disorder prediction 39 77 - -
Vifa1g06803 628 Gene3D - 335 533 IPR027417 -
Vifa1g06803 628 Pfam ATPase family associated with various cellular activities (AAA) 389 516 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06803 Vifa-Chr1 1049475670 1049483611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06803 387 592 Miscellaneous Gene Families AT5G53170 31.308 4.82e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06803 K17681 - gmx:100777755 1010.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06803 1 1049475670 1049483611 Vifa1g06803 1 1049475670 1049483611 ECH