Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06717 ATGTCCGCCGCACCTGTGTCTAATGGGAACGGCTCGTTTAAGAAGAAAGCAATGAATGCCTCAAACATTCTTAGGAATTCTTTGGCAAGAAAGGGCAGGCGGAGTAGCAAGGTCATGTCTGTTGAAATTGAGGATGTTCACGATGCTGAGGAGTTGAAAGCTGTTGAAGAGTTCCGTGAAGCTCTTATAGCGGATGATCTCCTCCCTGCAAAGCATGATGACTATCATATGATGCTTAGATTCCTAAAGGCCAGGAAATTTGAAATTGATAAATCAAAGCTGATGTGGTCTGATATGCTGAAATGGAGGACGGATTTCGGTGCCGACACTATTGGGGAGGAATTTGAATTCAAGGAAATTGACGAAGTATTGAAATATTATCCACAAGGACATCATGGAGTAGACAAAGAAGGAAGACCTGTGTACATAGAAAGATTAGGACAAGTTGATGCTGCCAAGATGATGCAAGTCACAACCATGGATCGCTATATCAAATACCATGTAAAGGAGTTTGAGAGGACATTCGATGTAAAGTTTGCAGCTTGTTCCATTGCTGCCAAGAAACACATCGATCAAAGTACGACTATCCTGGATGTGGAGGGAGTGGGGCTTAAAAGCTTCAACAAACATGCTAGGGAACTTGTTACTCGCATTCAGAAGATTGATGGTGACAACTATCCAGAGACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTTAGAATACTATGGAACACCGTAAAATCCTTCCTTGATCCCAAGACCACAGCAAAAATCCATGTTCTTGGCAACAAGTATGATACTAAGTTGCTTGAAGCAATTGATGCAAGTGAGTTGCCTGAGTTCTTAGGAGGTACATGTACATGTGCTGATGAAGGAGGATGTATGCGTTCGGATAAGGGACCATGGACAGATGCAGATATACTGAAGATGGTTCAGAATGGTGCTCACAAATGTTCAAGAAAATCTGAGTCTCTCATTGAGGAAGAGAACACAATTTCTGAGGAGGACCACAAGGATTCCAAGTTGGAGGAAAATCACACCTCACAGGTTTCTCCAATTTGTGAAGAGGTCCCTGCTACTAAAGTTTCCAAGCAAGAGGATTCAATCCCCGTGGATGATAAGAAAATTGCTCAGAAAAAAGTTGACTTAATCTCCGTGGATGATAAAAAAGCTTCTCAGAAAAAAATTGACGAGAGTGACCCCATGGCAACATCAACAGAGTTTATGACTGTCATGAAACGCATGACTGAGTTGGAACAGAAAATGACAAACATTAATCATAAGCCTGCTTTAATGCCACCTGAGAAGGAGGAAATGCTAAATAATACTATTAGTCGAGCTGATTTATTGGAAAAACAACTCATGGACACCAAGAAGGCTTTAGAGGATTCGCTGGCTAAGCAAGAGGAGATTTCGGCTTATGTTGAGAGCAAAAAGCAGAATAAAAGAACATGTTTTTGTTTCTGGTAA 1479 0.4138 MSAAPVSNGNGSFKKKAMNASNILRNSLARKGRRSSKVMSVEIEDVHDAEELKAVEEFREALIADDLLPAKHDDYHMMLRFLKARKFEIDKSKLMWSDMLKWRTDFGADTIGEEFEFKEIDEVLKYYPQGHHGVDKEGRPVYIERLGQVDAAKMMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVEGVGLKSFNKHARELVTRIQKIDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKIHVLGNKYDTKLLEAIDASELPEFLGGTCTCADEGGCMRSDKGPWTDADILKMVQNGAHKCSRKSESLIEEENTISEEDHKDSKLEENHTSQVSPICEEVPATKVSKQEDSIPVDDKKIAQKKVDLISVDDKKASQKKIDESDPMATSTEFMTVMKRMTELEQKMTNINHKPALMPPEKEEMLNNTISRADLLEKQLMDTKKALEDSLAKQEEISAYVESKKQNKRTCFCFW 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06717 492 MobiDBLite consensus disorder prediction 324 348 - -
Vifa1g06717 492 MobiDBLite consensus disorder prediction 324 353 - -
Vifa1g06717 492 Pfam CRAL/TRIO domain 125 287 IPR001251 -
Vifa1g06717 492 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 119 293 IPR001251 -
Vifa1g06717 492 SMART sec14_4 119 290 IPR001251 -
Vifa1g06717 492 SMART CRAL_TRIO_N_2 74 99 IPR011074 -
Vifa1g06717 492 SUPERFAMILY CRAL/TRIO N-terminal domain 48 114 IPR036273 -
Vifa1g06717 492 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 11 482 - -
Vifa1g06717 492 Gene3D - 33 106 - -
Vifa1g06717 492 CDD SEC14 120 288 IPR001251 -
Vifa1g06717 492 Coils Coil 450 474 - -
Vifa1g06717 492 FunFam SEC14 cytosolic factor 107 319 - -
Vifa1g06717 492 Gene3D - 107 319 IPR036865 -
Vifa1g06717 492 PRINTS Cellular retinaldehyde-binding protein signature 246 265 - -
Vifa1g06717 492 PRINTS Cellular retinaldehyde-binding protein signature 279 288 - -
Vifa1g06717 492 PRINTS Cellular retinaldehyde-binding protein signature 77 99 - -
Vifa1g06717 492 SUPERFAMILY CRAL/TRIO domain 119 315 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06717 Vifa-Chr1 1042138500 1042141832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06717 53 284 Acyl Lipid Metabolism Gene Families AT5G47730 28.631 2.16e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06717 K26544 - gmx:100527533 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06717 1 1042138500 1042141832 Vifa1g06717 1 1042138500 1042141832 ECH