Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06693 ATGCTTGGCGCCACAAAACGCGTTCCTGCACTGATCCCTCGTTTTCTCCAACCCCTCCGTCAACTCCATGAAGAAATCGAACAGAATATACATTTTCACAAAAGCAAAGGCCAACACATCCTCACAAACCCTCGAATCCTCGACACAATCGTCAGAAAATCCGCAATAAACCCCACCGACACGGTCCTCGAGATCGGCCCCGGCACCGGAAACCTCACCCTCAAACTTCTAGAAGCTTCCCACAAAGTCATAGCCATCGAACTCGACCACCGCATGGTTCACATCCTCGAAAATCGTGCCACCAAACACAACTTCCGTAGCAAACTAAGGGTGATAACTAAAGATGCGTTGAGAACAGATTTTCCACCGTTCGATCTCGTGGTAGCGAACATTCCATACGGTATATCTTCACCACTTATAATAAAACTAATATACGAAACGGCAGCGTTTCGGAGCGCGACTCTTCTACTTCAGAAAGAGTTTGCTCGAAGATTACTGGCTAATCCCGGTGACTCTGAGTTTAACCGGTTAGCCGTTAACGTTAAGCTTCTTGCTGACGTGGAGTTTGTTATGGACGTTAGCAAGAGAGATTTTTTCCCGCCACCTAAAGTTGATTCCTCCGTCATTATAATTCGACCTAAAGTTAACGTTCCCGACGTTAATCTCCGTCAATGGAGGGCTTTCACTAGGACTTGTTTTAATAACAAGAATAAAACGCTTGGTGCTATGTTTAGGAGTAAGAGGAAAGTTTTGGAGCTGTTGGAGTTTAATAATATGGCTGGTTTGGTTAAGGAACAAGGTGAAGTTTGTTTGTTTAAGGAGAAGATAGTTGGTGTTCTTAGAGAGGGAGGGTTTGATGATAAAAGGCCGTCGAAATTATCGATTGAAGAGTTGTTGCATTTGCTTGGTTTGTTTAATGAAGTTGGAGTTTATTTTGATCACCATGGGGGAGTCATGAATGAAGATGATATTGATGATTAA 981 0.4353 MLGATKRVPALIPRFLQPLRQLHEEIEQNIHFHKSKGQHILTNPRILDTIVRKSAINPTDTVLEIGPGTGNLTLKLLEASHKVIAIELDHRMVHILENRATKHNFRSKLRVITKDALRTDFPPFDLVVANIPYGISSPLIIKLIYETAAFRSATLLLQKEFARRLLANPGDSEFNRLAVNVKLLADVEFVMDVSKRDFFPPPKVDSSVIIIRPKVNVPDVNLRQWRAFTRTCFNNKNKTLGAMFRSKRKVLELLEFNNMAGLVKEQGEVCLFKEKIVGVLREGGFDDKRPSKLSIEELLHLLGLFNEVGVYFDHHGGVMNEDDIDD 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06693 326 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 32 309 IPR001737 -
Vifa1g06693 326 PANTHER DIMETHYLADENOSINE TRANSFERASE 18 307 IPR001737 -
Vifa1g06693 326 Gene3D Vaccinia Virus protein VP39 32 216 IPR029063 -
Vifa1g06693 326 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 62 89 IPR020596 GO:0000154|GO:0000179|GO:0008649
Vifa1g06693 326 CDD AdoMet_MTases 61 144 - -
Vifa1g06693 326 SMART rADcneu6 46 215 IPR020598 GO:0000154|GO:0000179|GO:0008649
Vifa1g06693 326 Hamap Ribosomal RNA small subunit methyltransferase A [rsmA]. 30 306 IPR011530 GO:0000179|GO:0006364
Vifa1g06693 326 FunFam rRNA adenine N(6)-methyltransferase 32 216 - -
Vifa1g06693 326 NCBIfam 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 31 302 IPR011530 GO:0000179|GO:0006364
Vifa1g06693 326 Gene3D - 219 314 - -
Vifa1g06693 326 Pfam Ribosomal RNA adenine dimethylase 31 256 IPR001737 -
Vifa1g06693 326 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 307 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06693 Vifa-Chr1 1038093404 1038094518 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06693 K14191 - gmx:100790908 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06693 1 1038093404 1038094518 Vifa1g06693 1 1038093404 1038094518 ECH