Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06686 ATGGCTTCAGCTTTATCCTCTATCATCAACCAACCTCACACTGCTCAACGCTTCAAGCTTCATTCTCCTTCTTCTTTCACTACTCTCACTTTCTTCAAACACAAATTCAAACCTTCATCTCCACGTCCTCTTCATCTCATCACACCTTCTAGAACCTTCTCCGTTTCCAATAAATCGGAAGAACCTTCCCTCCGTCACTTGATCGCTCGCGCTTCTCTAACGGCTTCCCATTTTCAATCGCATGTTGTGGCGGATACTGAAGTTTCTTCGACCGGTCGAATCTATCATGAGACGTATGGATGTCAAATGAATGTTAATGATATGGAGATTGTTTTATCTATAATGCAAAAGGCTGGATATAATGAAATTGCGACTGTTCCGGAGAATGCAGAGATAATATTCATTAACACATGTGCTATAAGAGAAAATGCAGAACTCAAAGTGTGGCAGAGGCTTAATTACTTTTGGTTTCTTAAGAGGAATTGGAAGGCCAATGTTGCTAATGGAAGGTCGCAATCTCTTCGTCCTCCCAAGGTGGTTGTTTTGGGATGTATGGCGGAGAGGTTAAAGGAGAAGATACTTGATGCGGATAAAATGGTTGATGTTGTATGTGGGCCGGATGCTTATAGGGATTTGCCCAGGTTGTTGGAGGAGGTTGAGTATGGACAGAAAGGGATTAACACTCTTCTTTCGCTTGAGGAGACTTATGCTGATATTAATCCGGTTAGGGTTTCTAAGAATTCAATTACTGCTTTTGTTTCGATTATGAGGGGTTGCAACAATATGTGTTCGTTTTGTATTGTGCCTTTTACGAGAGGTAGAGAGCGGTCTCGTCCTGTGGATTCCATTGTGAGAGAGGTGGGGGAGCTTTGGAAAGAGGGTGTGAAAGAAGTGACGCTTCTTGGGCAGAATGTGAACAGCTACAATGATGCATCTGTGGTTGAAAAAGAGGCTGAATCAGGGTCTAATTGGAAACTTAGTGAAGGATTTTCCAGCATATCGAAGGTCAGAACCACAGGCTTAAGGTTTTCTGATCTGTTGGATAGACTCTCGTTGGAATTTCCTGAAATGCGATTCAGATTCACGTCTCCACACCCTAAAGATTTTCCAGATGAACTGCTTTATCTGATGCGTGAAAGACATAATATATGCAACTTGATACATTTACCTGCACAATCAGGAAGTAGCAAAATGATTGAGAGAATGAGGCGTGGATATACTCGAGAAGCTTACTTGAGTCTTGTGCAAAAAATTCGAAATATTATTCCAGATGTGGCCTTGAGTAGTGATTTCATTTGTGGTTTTTGTGGAGAAACAGAGGAGGATCATTCTGCCACATTGAGTCTTGTAAAAGAAATTGGTTATGATATGGCATACATGTTTGCTTATAGCATGAGGGAGAAAACTCATGCCCACAGAAACTATGTCGATGATGTTCCCGAGGAAACTAAGCAGAGGAGGCTAACTGAACTTATTGAGACTTTCCGTGAGAGCACAGGAAAGTGTTACGACGAGCAGGTCGGAACTACACAGCTTGTGTTAGTTGAAGGACCGAACAAAAGAGCTCCAGATACGGAACTTATAGGCAAGAGTGACAAGGGCCATCGGGTATTATTTGTCAATCTGCCAATCTCAGACAGGGAAGATGTTAATACAAAGAGAAATCCTGTGGTTGGCGATTACGTTGAAGTCCGGATAACACGATCTTCAAGGGCATCACTCTTTGGCGATGCACTTGCTATTACTAAATTGAGTTCATTTTACAATAATCTGGAAAAAGAAGCTGTTGCGTGCAACATGTAA 1803 0.4193 MASALSSIINQPHTAQRFKLHSPSSFTTLTFFKHKFKPSSPRPLHLITPSRTFSVSNKSEEPSLRHLIARASLTASHFQSHVVADTEVSSTGRIYHETYGCQMNVNDMEIVLSIMQKAGYNEIATVPENAEIIFINTCAIRENAELKVWQRLNYFWFLKRNWKANVANGRSQSLRPPKVVVLGCMAERLKEKILDADKMVDVVCGPDAYRDLPRLLEEVEYGQKGINTLLSLEETYADINPVRVSKNSITAFVSIMRGCNNMCSFCIVPFTRGRERSRPVDSIVREVGELWKEGVKEVTLLGQNVNSYNDASVVEKEAESGSNWKLSEGFSSISKVRTTGLRFSDLLDRLSLEFPEMRFRFTSPHPKDFPDELLYLMRERHNICNLIHLPAQSGSSKMIERMRRGYTREAYLSLVQKIRNIIPDVALSSDFICGFCGETEEDHSATLSLVKEIGYDMAYMFAYSMREKTHAHRNYVDDVPEETKQRRLTELIETFRESTGKCYDEQVGTTQLVLVEGPNKRAPDTELIGKSDKGHRVLFVNLPISDREDVNTKRNPVVGDYVEVRITRSSRASLFGDALAITKLSSFYNNLEKEAVACNM 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06686 600 SUPERFAMILY Radical SAM enzymes 243 497 - -
Vifa1g06686 600 SMART MiaB 249 490 IPR006638 GO:0003824|GO:0051536
Vifa1g06686 600 SFLD B12-binding domain containing 175 471 - -
Vifa1g06686 600 FunFam CDK5 regulatory subunit-associated protein 1 247 506 - -
Vifa1g06686 600 CDD Radical_SAM 253 476 - -
Vifa1g06686 600 ProSiteProfiles TRAM domain profile. 504 580 IPR002792 -
Vifa1g06686 600 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 93 575 IPR005839 GO:0006400|GO:0016740|GO:0051539
Vifa1g06686 600 Pfam Radical SAM superfamily 253 449 IPR007197 GO:0003824|GO:0051536
Vifa1g06686 600 Gene3D tm_1862 like domain 247 506 IPR023404 -
Vifa1g06686 600 SFLD Radical SAM 90 584 IPR007197 GO:0003824|GO:0051536
Vifa1g06686 600 ProSiteProfiles Radical SAM core domain profile. 245 501 IPR007197 GO:0003824|GO:0051536
Vifa1g06686 600 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 90 580 IPR006463 GO:0006400|GO:0016740|GO:0051539
Vifa1g06686 600 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 92 221 IPR013848 GO:0035596|GO:0051539
Vifa1g06686 600 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 57 593 - -
Vifa1g06686 600 SFLD CDK5RAP1 90 584 - -
Vifa1g06686 600 Gene3D - 93 235 IPR038135 -
Vifa1g06686 600 Pfam TRAM domain 505 579 IPR002792 -
Vifa1g06686 600 ProSitePatterns Methylthiotransferase radical SAM domain signature. 253 273 IPR020612 GO:0051539
Vifa1g06686 600 Pfam Uncharacterized protein family UPF0004 93 205 IPR013848 GO:0035596|GO:0051539
Vifa1g06686 600 FunFam CDK5 regulatory subunit-associated protein 1 92 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06686 Vifa-Chr1 1036291312 1036297068 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06686 - - gmx:100799544 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06686 1 1036291312 1036297068 Vifa1g06686 1 1036291312 1036297068 ECH