Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06401 ATGAAAGAAGATCTGGTTGAGTGTTCTAAAGGCTTAAACATACCTTTAACACCGGTTAGTTTCCTAGAACGAGCAGCGACGTTGTATGGTGACAAAGTTTCTATCATCTATGGTGATCATGTCAGATTTTCATGGAGACAAACCTATGAAAGATGTCTCAAACTTGCTTCTGCTTTGGTCAACTTGGGAATTTCTCATGGTGACATTGTGGCAACTTTGGCACCAAATATTCCAGAACAATATGAGCTTCATTTTGGTGTACCAATGGCAGGTGCTATTATTTCTGCACTCAATCCTAAACTTGATGCAACAACATTAGCAATAATATTAGAACAATTAGAGAATTGCAAAATCATATTTGTGGATTATGAATTTATTGATTCTGCTCTCAAAGCAACAAAGTTAATCTCCCAAAAAAAATTAATGGCACCTCTTATTGTTCTAATCCAGGATTATGACCTATTAGTGAAAGATTTACCACAAGGCTCGACGGGAATTCCAAAAGGAGTTGTTTATAGTCATAGAAGTGTTTATCTTAATTCCCTCGCGACGATGACTCGTTTCAACGTGAAAAGTTCGTCGGTTTTTCTATGGACAGTTGACATGTTTAGGTGCAATGGATGGTGTTTCATTTGGCTAATGCCCGTTCTTGGGGGAACAAATATTTGTGTTAGAGATAATTTTTCAGCAAAGGATATTTCTGAGGCAATTTATTTTCATAAGGTGACACATTTTTGTGGCGCGCCTATCCTTTTGGAAATTATTGCGAATTGTGATGTTATTAAGCCTTTTTCGCACAAGGTTAGTGTCACGGTTGCTGGTGTATTACCTTCGTTCGCAATTCTTGACAAAGTGGTGGAGATTGGATTCGATGTGAATATTGGTTATGGTATGACTGAAGTGTTGGGTCCAGTTATCGTGAGAAAGTGGAAAAAGAATTTTGATGATGATGTTACAAAGCTTAATTATATTGAAGAAGGTGTTATAGATTTTATGATGGTAGAGTTTGATGTGAAAGAGCCTAATACAATGAAGAGTGTTCCTTGTGATGGAAAAACTATAGGTGAGATTATGTTCAAAGGGAATACTTTGATGTTAGGGTATCTCAAGAATTCAAAAGTGAGAGATGAAGCTTTTAGGGATGGTTGGTATAGGACTAGGGACCTTGGTGTTAGGTTACCTAATGGTTCTTTTAGTTTGAAAGATAGAGCTAAAGATGCTATTTATTGTAAGGGTGAGTTTGTGAGTTCATTAGAGGTTGAAGGTGTGTTGATGAATCATCCAAAGGTTTTGAAAGTGGCTGTTGTTGGGGGGTTTTGTGAGGGTTTGGTGGAGTCACCTTGTGCAATTGTGAAATTGAAGGATGGTTGTAGTGCTGATGTTGAAGATATTGTCAAGTTTTGTGAAGGTCATTTGGATGCTCATATGGTTCCTAAGAGTGTGGTGTTTGGTGATTTGCCTCTTAATTCAACTGGGAAGGTGCAAAAGTTTGTTATTAGAGAAAAGATTACAAGTAATGGGTTGTGTGACTCCATTAATTAG 1542 0.3729 MKEDLVECSKGLNIPLTPVSFLERAATLYGDKVSIIYGDHVRFSWRQTYERCLKLASALVNLGISHGDIVATLAPNIPEQYELHFGVPMAGAIISALNPKLDATTLAIILEQLENCKIIFVDYEFIDSALKATKLISQKKLMAPLIVLIQDYDLLVKDLPQGSTGIPKGVVYSHRSVYLNSLATMTRFNVKSSSVFLWTVDMFRCNGWCFIWLMPVLGGTNICVRDNFSAKDISEAIYFHKVTHFCGAPILLEIIANCDVIKPFSHKVSVTVAGVLPSFAILDKVVEIGFDVNIGYGMTEVLGPVIVRKWKKNFDDDVTKLNYIEEGVIDFMMVEFDVKEPNTMKSVPCDGKTIGEIMFKGNTLMLGYLKNSKVRDEAFRDGWYRTRDLGVRLPNGSFSLKDRAKDAIYCKGEFVSSLEVEGVLMNHPKVLKVAVVGGFCEGLVESPCAIVKLKDGCSADVEDIVKFCEGHLDAHMVPKSVVFGDLPLNSTGKVQKFVIREKITSNGLCDSIN 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06401 513 Pfam AMP-binding enzyme 23 408 IPR000873 -
Vifa1g06401 513 Gene3D - 405 506 IPR045851 -
Vifa1g06401 513 PANTHER ACYL-ACTIVATING ENZYME 162 504 - -
Vifa1g06401 513 Pfam AMP-binding enzyme C-terminal domain 419 493 IPR025110 -
Vifa1g06401 513 Gene3D - 7 404 IPR042099 -
Vifa1g06401 513 SUPERFAMILY Acetyl-CoA synthetase-like 13 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06401 Vifa-Chr1 997078748 997081763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06401 16 507 Miscellaneous Gene Families AT3G16910 40.183 1.32e-131 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06401 - - aprc:113870314 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06401 1 997078748 997081763 Vifa1g06401 1 997078748 997081763 ECH