Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06399 ATGGCAACGCGAAAATCCGCACCGCACTTTCTCAAACAACTCTACACCTCGCGCCACCACCTCAACCCAACCCGCTCCGTCACCTACATGCCCCGACCCGGAGACGGCACACCTCGCAGCGTAACGCTCATCCCCGGCGACGGGATCGGACCGCTAGTTACCGGCGCGGTGGAGCAGGTAATGGAGGCCATGCATGCGCCGGTGTACTTTGAGAAGTTTGAAGTGCACGGTGACATGAAAGCGGTGCCAGGTGAAGTGTTGGAGTCGATTAGGAAGAATAAGGTTTGTTTGAAAGGTGGATTGGAGACTCCTATGGGTGGGGGTGTTAGTTCGCTTAATGTGCAGTTGAGGAAGGAGCTTGATCTTTATGCTTCTCTTGTTAACTGTTTTAATCTTCCGGGGTTAACTACGCGGCATGATAATGTTGATATTGTTGTTATTAGGGAGAATACAGAGGGGGAATATGCTGGACTTGAACATGAGGTTGTTCCTGGTGTTGTTGAGAGCCTCAAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTACGCATATCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAACTCGCTGATGGTTTATTCTTGGAATCTTGTCGAGAAGTTGCCACAAAGTATCCTGGAATCAAGTATAATGAAATTATTGTAGATAATTGTTGCATGCAGCTTGTTTCAAAACCTGAACAGTTTGATGTCATGGTAACCCCCAATCTATATGGAAATCTTGTTGCAAATACAGCGGCAGGCATTGCTGGTGGAACTGGTGTCATGCCGGGAGGTAATGTTGGTGCTGACCATGCCGTATTTGAACAAGGTGCTTCAGCAGGAAATGTCGGTAAAGAAAAAGTAGTACAACAAAAGAAAGCCAACCCTGTGGCACTCCTCCTTTCATCGGCAATGATGCTTAGACATCTTCGGTTTCCTGCATTTGCTGACCGATTGGAAACTGCTGTGAAGCGAGTCATTTTAGAGGGCAAACACCGGACCAAGGACCTTGGAGGGATAAGCACCACCCAAGAGGTTGTTGATGCAGTGGTAGATGCATTAAATTAA 1107 0.4679 MATRKSAPHFLKQLYTSRHHLNPTRSVTYMPRPGDGTPRSVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKFEVHGDMKAVPGEVLESIRKNKVCLKGGLETPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLTTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKEKVVQQKKANPVALLLSSAMMLRHLRFPAFADRLETAVKRVILEGKHRTKDLGGISTTQEVVDAVVDALN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06399 368 Pfam Isocitrate/isopropylmalate dehydrogenase 41 363 IPR024084 -
Vifa1g06399 368 SMART Iso_dh_2 40 363 IPR024084 -
Vifa1g06399 368 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 28 367 - -
Vifa1g06399 368 Gene3D Isopropylmalate Dehydrogenase 28 367 - -
Vifa1g06399 368 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 39 367 - -
Vifa1g06399 368 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 27 367 - -
Vifa1g06399 368 NCBIfam isocitrate dehydrogenase (NAD(+)) 37 366 IPR004434 GO:0006099
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06399 Vifa-Chr1 997072733 997077487 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06399 K00030 - gmx:100778831 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06399 1 997072733 997077487 Vifa1g06399 1 997072733 997077487 ECH