Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06393 ATGGCTTGCTTAACTCGCCACAATTATCATTCTCGTCTCCCTAAAATGGTCTCTGAAAAACCCTTCCCTCTCTCTTCTCCCTCTTACCGTCTTGACAAAGTTTTCCCTGTTTATGCTATGGGTTTACCCGACCCGGTTCCTCAGTCCATCCTAGACGGGTCGGACCCCATTTGGGAAGCTGTCAAACTAGAAGCTAAGCTTGAGGCTGAAAAGGAACCGGTTTTGAGTAGTTTCTTGTACGCTAGTGTTCTGTCACATGAGTGTTTGGAGCAAGTACTGGCTTTTGTCGTTGCCAATCGTCTTCAAAGTCCTACTCTTTTGGCTACACAGCTCATGGACATAATGTCCAATGTCATCATGCATGATAAAGGGATTCAGCGATCCATTCGCCTTGATGCTCAGGCATTCAAAGAAAGGGACCCTGCATGTTTGTCATATTGCACTGCAATTTTGTATATGAAGGGTTTTCATGCGCTGCAAGTCCATCGAGTAGCGCATGTATTGTGGCACCAGGGACGCACAATCTTGGCCCAAGCTTTGCAAAGCCGTGTTAGCGAGGTTTTTGCAATTGACATTCATCCTGCTGCGAAAATCGGGGAGGGAATTTTATTAGATCATGGGACAGGCGTGGTTATTGGTGAAACCGCTGTTATTGGAAACAGAGTTTCATTGATGCAAGGTGTAACATTGGGAGGCACGGGGAAGGATACAAGTGATCGGCATCCCAAAATAGGCGAAGGGGCACTTATTGGAGCTGGTTCAACTATACTCGGAAATATAAAAGTTGGTGAAGGTGTGATGATCGCTGCTGGTTCCCTTGTGTTAAAAGATGCCCCTCCCAGCAGCATTGTGGCAGGAATACCGGCAAAAGTTATTGGCGGTCTAAGGGAGCATGACCCGGCTTTAACCATGAAACATGATGCTACAAAACCATTTTTCACTGATGTAACTGTTAACATTATAGATGAAAAGTCCAGTGGAGCAAAGAATCAAGAGAAAAAGGAAGCACACATTTGA 1017 0.4543 MACLTRHNYHSRLPKMVSEKPFPLSSPSYRLDKVFPVYAMGLPDPVPQSILDGSDPIWEAVKLEAKLEAEKEPVLSSFLYASVLSHECLEQVLAFVVANRLQSPTLLATQLMDIMSNVIMHDKGIQRSIRLDAQAFKERDPACLSYCTAILYMKGFHALQVHRVAHVLWHQGRTILAQALQSRVSEVFAIDIHPAAKIGEGILLDHGTGVVIGETAVIGNRVSLMQGVTLGGTGKDTSDRHPKIGEGALIGAGSTILGNIKVGEGVMIAAGSLVLKDAPPSSIVAGIPAKVIGGLREHDPALTMKHDATKPFFTDVTVNIIDEKSSGAKNQEKKEAHI 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06393 338 CDD LbH_SAT 188 288 IPR045304 -
Vifa1g06393 338 FunFam Serine acetyltransferase 191 312 - -
Vifa1g06393 338 Gene3D Hexapeptide repeat proteins 191 315 - -
Vifa1g06393 338 SMART SATase_N_2_a 57 161 IPR010493 GO:0005737|GO:0006535|GO:0009001
Vifa1g06393 338 Gene3D serine acetyltransferase, domain 1 41 190 IPR042122 -
Vifa1g06393 338 FunFam Serine acetyltransferase 4 44 190 - -
Vifa1g06393 338 NCBIfam serine O-acetyltransferase 130 290 IPR005881 GO:0005737|GO:0006535|GO:0009001
Vifa1g06393 338 SUPERFAMILY Trimeric LpxA-like enzymes 52 305 IPR011004 -
Vifa1g06393 338 Pfam Bacterial transferase hexapeptide (six repeats) 241 274 IPR001451 -
Vifa1g06393 338 PANTHER SERINE ACETYLTRANSFERASE 52 317 - -
Vifa1g06393 338 Pfam Serine acetyltransferase, N-terminal 57 160 IPR010493 GO:0005737|GO:0006535|GO:0009001
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06393 Vifa-Chr1 996010556 996013866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06393 35 327 Miscellaneous Gene Families AT2G17640 69.153 1.54e-138 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06393 K00640 - gmx:100775449 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06393 1 996010556 996013866 Vifa1g06393 1 996010556 996013866 ECH