Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06343 ATGTCTGAAGCCGAAGAGTCCTCTTCATACCCTCCCATAGACCCGGTGAACTTCGATCTCATCATCATCGGTACCGGACTTCCCGAATCGATCATCGCCGCCGCCGCATCGGCCATAGGTAAGACCATCCTCCACCTCGACCCTAATTCCTTCTATGGAAGCCATTTCTCTTCCCTCTCTCTAGAAGAAATCACCTCCTACCTCAATTCCCCTCCCAAATCCACCACCGCCGCCACATCATCAAGCGATGGTTCCGACTACGCCGTCATAAACCTCATACATCAACCTCTTATATCCGACGCAGAGCTTATTTCGTGCAACTCTATCGACGAAACCACGTTTCTTCTAGAAAATTCGAGAAAGTTCAACCTCGATTTGGGAGGACCTAGGGCTTTGTTCAGCGCGGACAAGACAATCGACCTGTTGTTGAAATCAGATTCACGTGGAGCCATTTTTAGAGACAAGAAGCTTTCGCTTAAGGAAAAAAACCAATTGATGAAGTTCTTTAAGCTTGTTCAGCAACACTTGGATGATAATGAGGATGGGAAGATTTCAGAGGAAGACATGGAGAGTCCTTTTGTTAGTTTCTTGGAGAAAACTGGGTTGCCGCCAAAGATAAAAGCGATTCTTTTGTATGCTATAGCCATGGTAGATTATGATCAAGAAAATGGCGAGGTTTGTAAAGATTTACTTGCAACGAAAGATGCAATAGATCTTTTAGCTCAATACAGCTCATCTGTTGGAAGGTTTCCCAGTGCACCGGGGCCTTTGATTTACCCTATTTATGGTGAAGGAGAACTACCACAAGCTTTTTGTCGTCGTGCTGCTGTCAAAGGTTGCATTTATGTTCTCCGGATGCCGGTTATTTCTCTGCTTATGGATAAGGTTACTGAGTCGTATAAAGGAATGGTGGCAAGGGGAATATGCATCACAAGGAGTTCCATAAAGCCAGATGTGTCAAATTGCTCTGTGGTGTATCCTCCTAGATCTCTATATCCTGATCAGCTTACATCAGTCAGAGCTCTTCAGATAGGATCAAATCTCACTGTTTGTCCTGCGGGCACCTTTGTTTTATATTTTTCCACTTTGTGCAATGATGCCGATGAAGGAAAGAAGTTACTAAAAGCATCCATGAAGGCTCTTCTTACATTGCCTATATCTGGAAACACAGAAAGTACTTCCATTGTTCAAAGTGACAGTGAAGATAAAAAAGCCGTTGTGCTCTGGAGTGCAATTTATGTTCAAAAATTAACTACGAGTGAATTTGAAGCTATCAGTTCCACTCCAACACCAGATGGAAATCTAAATTACAATGACCTTGTAGATGCAACTGAGAAGCTATTTAGTCAAATGTACCCCAATGAAGAATTCTTCCCAAAGACGACATCCCCTGAAGATTCCACAGACGACGGCGATAATGGGATAATTATGGAGAGCTAA 1440 0.4326 MSEAEESSSYPPIDPVNFDLIIIGTGLPESIIAAAASAIGKTILHLDPNSFYGSHFSSLSLEEITSYLNSPPKSTTAATSSSDGSDYAVINLIHQPLISDAELISCNSIDETTFLLENSRKFNLDLGGPRALFSADKTIDLLLKSDSRGAIFRDKKLSLKEKNQLMKFFKLVQQHLDDNEDGKISEEDMESPFVSFLEKTGLPPKIKAILLYAIAMVDYDQENGEVCKDLLATKDAIDLLAQYSSSVGRFPSAPGPLIYPIYGEGELPQAFCRRAAVKGCIYVLRMPVISLLMDKVTESYKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPDQLTSVRALQIGSNLTVCPAGTFVLYFSTLCNDADEGKKLLKASMKALLTLPISGNTESTSIVQSDSEDKKAVVLWSAIYVQKLTTSEFEAISSTPTPDGNLNYNDLVDATEKLFSQMYPNEEFFPKTTSPEDSTDDGDNGIIMES 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06343 479 Gene3D - 14 93 IPR036188 -
Vifa1g06343 479 PANTHER RAB GDP-DISSOCIATION INHIBITOR 14 146 IPR018203 GO:0005092|GO:0007264
Vifa1g06343 479 FunFam Rab proteins geranylgeranyltransferase component 144 256 - -
Vifa1g06343 479 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 146 254 - -
Vifa1g06343 479 SUPERFAMILY FAD-linked reductases, C-terminal domain 301 417 - -
Vifa1g06343 479 ProSitePatterns EF-hand calcium-binding domain. 177 189 IPR018247 -
Vifa1g06343 479 MobiDBLite consensus disorder prediction 456 479 - -
Vifa1g06343 479 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 287 416 - -
Vifa1g06343 479 Pfam GDP dissociation inhibitor 17 295 IPR018203 GO:0005092|GO:0007264
Vifa1g06343 479 FunFam Rab proteins geranylgeranyltransferase component A 14 91 - -
Vifa1g06343 479 SUPERFAMILY FAD/NAD(P)-binding domain 16 294 IPR036188 -
Vifa1g06343 479 PIRSF Rab_ger_ger_transf_A_euk 4 105 IPR001738 GO:0005968|GO:0006886|GO:0018344
Vifa1g06343 479 PIRSF Rab_ger_ger_transf_A_euk 146 307 IPR001738 GO:0005968|GO:0006886|GO:0018344
Vifa1g06343 479 PIRSF Rab_ger_ger_transf_A_euk 91 147 IPR001738 GO:0005968|GO:0006886|GO:0018344
Vifa1g06343 479 PIRSF Rab_ger_ger_transf_A_euk 303 478 IPR001738 GO:0005968|GO:0006886|GO:0018344
Vifa1g06343 479 PRINTS Rab GDI/REP protein family signature 37 54 IPR018203 GO:0005092|GO:0007264
Vifa1g06343 479 PRINTS Rab GDI/REP protein family signature 263 284 IPR018203 GO:0005092|GO:0007264
Vifa1g06343 479 PRINTS Rab GDI/REP protein family signature 161 176 IPR018203 GO:0005092|GO:0007264
Vifa1g06343 479 PRINTS Rab GDI/REP protein family signature 19 37 IPR018203 GO:0005092|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06343 Vifa-Chr1 988427184 988432726 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06343 K23460 - gmx:100795946 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06343 1 988427184 988432726 Vifa1g06343 1 988427184 988432726 ECH