Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06333 ATGGCGACGATAAGACCATTACCGGAATCTGTTCGTAGCTCAATTCGTTCCGGCATTTCCTTGTTCGATTTCACAAGAATCGTTGAGGAACTTATTTTCAATAGCCTCGATGCTCGTGCTACAAAGGTATCGGTGTTTGTTAATGTTGGGAACTGCTTCTTAAAAGTAGTTGATGACGGAGATGGAATTACTCGAGATGGACTGGAATTGGTGGGAGAAAGATATGCAACATCAAAATTTCTTAATTTGGCTGATCTAAATACTACAAGTGAAAACTTTGGTTTTCGCGGTGAAGCTTTAGCTTCCATTTCGGAAGTATCTTTGTTGGAAATAGTGACAAGAGCTTATGGAAGGCCAAATGGTTATAAAAAAGTATTAAAGGGGTGCAAGTGTTTATACCTTGGTATTGATGATGATAGAAAGGAAGTAGGCACAACAGTCATTGTCTGTGAAATATTTTACAACCAACCAGTTCGGAGGAAGCACATTGAATCCAGCCCCAATAAGGTACTCCAGTCAATCAAGAAATGTGTAATGCGGCTTGCACTTGTGTGCCCAAAAATTTCCTTCAAAGTTGTTGATATTGAAAGAGAGGATGAGCTTTTCTGCTCACATTCTGCTGCTTCTCCACTGTCACTTGTAACCACTGGCTTCGGGGTGGAGGTCACAAACTCTCTTCATGATTTAGAAGTTGAAAACAATATCATAAAGCTTACTGGATTCATATCGGATCCTTGCAATACCCTTGATATGAAGGCCTTACAGTATCTCTATATTAACTCACAGTTCGTTTGCAAGGGACCTATTCATAAGCTTTTAAGTCAACTGGCTATTAGATTTGAGCATCGTAACTCGTGGAGTGCTGATAATGAATGCAAAAACAAAAAGAGAGACAGATCGCAGCCATGTCCGGCATATATCTTGAATTTAAGGTGCCCCCGGTCTTTATATGTTTTGAGCTTTGAGCCATCAAAAACTTATGTTGAATTCAAGGATTGGTCTCCAATACTAAACTTCATTGAAAAGGTCATCAAACATTTTTGGGAGGGAAGCATAGCTTATGGAGATTCCACCAATAAAGCCACTTATACTGTTCAAAAAGATCAACGGAAAAAAGTAGATCCAGATGTCAACACCATTTCAGTGGAAGCAGATATATCAAAATTTGGAAACCAAAATCGTAAGGGTTGTTTAGACCTCTTCTTTTCCACTTCAGACAAGCTAACTGAAGATGACAATCATCAATGCAACAGGGAGGATATTAGAACTAACATTGGTTACTTACATCGAGGGACTGAGATGTTCAAAGATAAACAAAACACGGGAGGGCTTCATTGTCGGACCGGGTATTCTGGAAATTTACTCGACGTTTCATACGCCAAAAGCATGCCTACCACTAAGAAAAAGAACAGCAATTTTTGGGCGTATGATGACAATGATTTGTTGCAAGGAGTTTATTTTTCAGATGAGATTGATGGGGATTTTCAAAAGCCTTTTCTAAAAAGCTGCTCTACACAAAAAGGAAATATTCTGCATGAGAAGGCTTTGCTCGTAAATAATGAACCTGAACTCCAAACTTTTAGCTTTTGGAGCAAGCAAAATCTAGGGGGGGATTGTTTCATTGGTAAGGATTTAAATGCCCTTCCATGTGTAGAAGTTGCAAAAAAATTGAAGATGTCTGAAGATTCTGATTTTCTTTTAAGAGCACAGTATGAAGAAAATTGTCGACCTTCAGATTCATGGTATTCAGCAACACAAATAGGAAACTCTAGTTCTGATGATCAGTTACCAAACTTTGAAAGGTATCCTGTTTATCAAAGTCCCTCACCTAAGGCTACTGCATTGTGTGTTTATCATACCAATGATATTAACGATCTTCAAAGAGCATCTAGATGCTATGAAAGGACTCACCATACACACAAAATTTATGACGAAGAAATTGAGAACTACTTCAGTTACAATCTTGAGGGAGCATCTAAATACTGCAAAAGGATCCATCATACACGTGTTTTTGATGATGAAGAAAAAGGATTGGTTGACTGGCCTGATTTCGTTGATTCATATTTCCCAAAAAGGCCGGGTATTTTAGATGAGGAAACCGACTTGCTGTTATCTGGGTCATATGTTGGAAACTGTACGAGACCCAATATTAATGAAGGCAAAAGGGACCGTTTTAGGCATCCAGCTTTGGAGAAGACTCGTGTAAGATCTAAAAGAAGCTTCTCAGCTCCACCATTTCATAGAAGTAAAAGGAGGTTTTTCTCTTTAAATCAGCTTCCAGAAATGGTAGCTAAAAGATCTACCGGCCAAGCATCCCACCCTACTACCAGTCTTCTAGAAGCCAGTGATTTTAAGTATTCTCAACATCCTTCTGCTTTTCACCCCAGCAAAGAAGATCTATTGCAAGAATTTAAATCTAATGTGAAACGGAGTTCAGAGGTTCCGGGGGCTCCACAGATTGATGACATTGCCAAGACTGATGGTTTTGAAAATTTCAATGTTCAACAGAATGATCCATTCAGGGAATTGATATCTAGGGAAGTACAAGACCCCATAGATTATGGGACCAAATGGAGGAGCCGCTCACCCCAAACTCCAAAGAACGATAAACTAATTGATATTGGAAATCAGAACAATATACTTGACATCTCTTCTGGATTCTTGCATCTTGCCGGAAATTCTCTAATACCTGAAACTATAAGTAAGAAATGCCTTGAGGATGCCAAAGTTCTCCATCAGGTCGATAAGAAATTCATTCCAATCATGGGTGGCAGAACCCTTGCCATTATTGATCAGCATGCTGCAGACGAAAGAATCAGACTGGAAGACTTACGTCAAAAGGTATTATCTGGAGAAGCAAAAGCAATAACCTATCTAGACGCTGAACAGGAGCTGGTGCTGCCAGAGATGGGTTATCAATTACTTAATAGTTACGGTGAACAAATAAAAGATTGGGGCTGGATCTGTAAGATTCATACTCAAAATTCTGAATCCTTTAGAAGGAATTTGGATATTCTCAACAGACAACAAATGACCATCACCCTTGTTGCGGTACCATCTATTTTAGGTGTCAATTTAAACGATGTTGATCTATTAGAGTTTCTTCAGCAGCTTGCTGATACTGATGGATCATCAACAATGCCACCCTCGGTTGTACGACTCCTAAATTCAAAAGCGTGCAGAGGTGCAATCATGTTTGGGGATTCATTGCTCCCATCAGAATGTTCCCTTCTAGTGGAAGAGCTAAATCATACATCACTCTGTTTCCAGTGTGCTCATGGACGACCAACCACTGTTCCTCTTGTCAACTTGGAGGCACTGCATAATCAAATTGCCAGGCTTGGATTGATGAATGAAGGGTCAAGTAATAATAGGTGGCATGGATTACAAAGACGTAAAGTGTGTATAGAACGTGCAGTACAGCGTTTAAGTTCTGCTAGGAGTTGA 3447 0.3951 MATIRPLPESVRSSIRSGISLFDFTRIVEELIFNSLDARATKVSVFVNVGNCFLKVVDDGDGITRDGLELVGERYATSKFLNLADLNTTSENFGFRGEALASISEVSLLEIVTRAYGRPNGYKKVLKGCKCLYLGIDDDRKEVGTTVIVCEIFYNQPVRRKHIESSPNKVLQSIKKCVMRLALVCPKISFKVVDIEREDELFCSHSAASPLSLVTTGFGVEVTNSLHDLEVENNIIKLTGFISDPCNTLDMKALQYLYINSQFVCKGPIHKLLSQLAIRFEHRNSWSADNECKNKKRDRSQPCPAYILNLRCPRSLYVLSFEPSKTYVEFKDWSPILNFIEKVIKHFWEGSIAYGDSTNKATYTVQKDQRKKVDPDVNTISVEADISKFGNQNRKGCLDLFFSTSDKLTEDDNHQCNREDIRTNIGYLHRGTEMFKDKQNTGGLHCRTGYSGNLLDVSYAKSMPTTKKKNSNFWAYDDNDLLQGVYFSDEIDGDFQKPFLKSCSTQKGNILHEKALLVNNEPELQTFSFWSKQNLGGDCFIGKDLNALPCVEVAKKLKMSEDSDFLLRAQYEENCRPSDSWYSATQIGNSSSDDQLPNFERYPVYQSPSPKATALCVYHTNDINDLQRASRCYERTHHTHKIYDEEIENYFSYNLEGASKYCKRIHHTRVFDDEEKGLVDWPDFVDSYFPKRPGILDEETDLLLSGSYVGNCTRPNINEGKRDRFRHPALEKTRVRSKRSFSAPPFHRSKRRFFSLNQLPEMVAKRSTGQASHPTTSLLEASDFKYSQHPSAFHPSKEDLLQEFKSNVKRSSEVPGAPQIDDIAKTDGFENFNVQQNDPFRELISREVQDPIDYGTKWRSRSPQTPKNDKLIDIGNQNNILDISSGFLHLAGNSLIPETISKKCLEDAKVLHQVDKKFIPIMGGRTLAIIDQHAADERIRLEDLRQKVLSGEAKAITYLDAEQELVLPEMGYQLLNSYGEQIKDWGWICKIHTQNSESFRRNLDILNRQQMTITLVAVPSILGVNLNDVDLLEFLQQLADTDGSSTMPPSVVRLLNSKACRGAIMFGDSLLPSECSLLVEELNHTSLCFQCAHGRPTTVPLVNLEALHNQIARLGLMNEGSSNNRWHGLQRRKVCIERAVQRLSSARS 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06333 1148 Gene3D - 2 207 IPR036890 -
Vifa1g06333 1148 SMART DNA_mis_repair_2 214 349 IPR013507 GO:0005524|GO:0006298|GO:0030983
Vifa1g06333 1148 SUPERFAMILY Ribosomal protein S5 domain 2-like 219 348 IPR020568 -
Vifa1g06333 1148 Gene3D - 913 1101 IPR042120 -
Vifa1g06333 1148 Pfam DNA mismatch repair protein, C-terminal domain 218 347 IPR013507 GO:0005524|GO:0006298|GO:0030983
Vifa1g06333 1148 Pfam MutL C terminal dimerisation domain 909 1070 IPR014790 GO:0005524|GO:0006298
Vifa1g06333 1148 SMART MutL_C_2 910 1070 IPR014790 GO:0005524|GO:0006298
Vifa1g06333 1148 Gene3D - 215 352 IPR014721 -
Vifa1g06333 1148 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 23 201 IPR036890 -
Vifa1g06333 1148 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 IPR014762 -
Vifa1g06333 1148 FunFam DNA mismatch repair endonuclease MutL 1 213 - -
Vifa1g06333 1148 Gene3D - 954 1065 IPR042121 -
Vifa1g06333 1148 NCBIfam DNA mismatch repair endonuclease MutL 4 376 IPR002099 GO:0005524|GO:0006298|GO:0030983
Vifa1g06333 1148 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 118 - -
Vifa1g06333 1148 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 1 1106 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Vifa1g06333 1148 SUPERFAMILY DNA mismatch repair protein MutL 908 1101 IPR037198 -
Vifa1g06333 1148 FunFam MUTL protein homolog 3 954 1065 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06333 K08739 - gmx:100788019 1521.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06333 1 987326602 987342586 Vifa1g06333 1 987326602 987342586 ECH