Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06275 ATGGACGTTCACCAGCGAAGCCTGAAAACCGTCGATGGTTCAGCTCTCTCCGGCAAAACTTCCAAAACTAAAAACCTAAAACACGATTCACAGTCACAACCTTCACTCTACTTGACTAACGCTGTTTTCTTCGGTCTCTTCTTCTCTGTTGCGTACTTTCTTCTTCACAGGTGGCGTGAGAAAATCCGAACCTCTACTCCTCTACACGTCCTCACAATCTCCGAGATTGTAGCTGTACTTTCCCTCGTAGCTTCATTTTTCTATCTTATGGTTTTCTTCGGTATTGGCTTCATCCTTCATCCATTTGCCGCGTTTCGTGCCGTTCAGTATGATGAAGAAGATGCAGCAGAGATTGATAAAACCTCCGGTTCATGCCTTGCTGAAGTATCACCCAAGTTACCTCCGCTACCGCCGAATATTGGCGCTAATAAAGTTGCTCCGGCACCGGTGCTGATTTCGTCCGATGACGAGGAAGTTGTCCAGGCTGTCGTTTCAGGATCTATTCCGTCTTACTCACTTGAATCCAAACTCGGAGATTGCCGGCGTGCGGCGGCGATTCGTAACCAAGCGGTGGAGAGAGTTACCGGAAGGTCACTTGAGGGTCTACCGATGGAAAATTTTGACTACGATTCTATATTAGGACAGTGTTGCGAGATGCCGATAGGATTTGTTCAGATTCCTGTAGGAGTTGCCGGTCCTTTGTTGCTCGACGGGAAAGAGTTCACGGTGCCGATGGCAACCACTGAAGGCTGTTTGGTTGCAAGCACTAATAGAGGTTGTAAAGCTATTTATGTTTCCGGTGGTGCTACCGCCGTTGTCCTCCGTGATGGTATGACTAGAGCCCCCGTCGTTAGATTCAACTCCGCCATAAGAGCTTCTCAGTTAAAGTTCTTTTTAGAAGATCCTCAAAATTTTGATTCACTCGCCCATACTTTCAACAAGTCAAGTAGATTTGCGAGATTACAGAATATAAAATCTACTATGGCAGGAAAGAATTTATACATTAGATTTACGTGTTCAACCGGTGATGCGATGGGGATGAACATGGTATCAAAAGGTGTACAAAACGTGCTTGATTTTCTTCAAAGTGATTTTCCAGATATGGATGTTATTGGAATATCAGGAAATTTTTGTTCGGACAAGAAAGCAGCTGCAGTAAATTGGATTGAAGGGAGAGGAAAATCTGTGGTGTGTGAGGCTGTAATAAAGGAAGAGGTGGTGAAGAAAGTGTTGAAGACTAGTGTTGAGTCTTTGGTTGAGCTTAACATGCTAAAGAATCTAACTGGTTCAGCCCTGGCTGGTGCTCTTGGTGGATTCAATGCACATGCTAGTAATATTGTATCTGCTATTTACTTGGCTACAGGGCAAGATCCAGCTCAGAATGTTGAGAGTTCTCATTGTATGACCATGATGGAAGCTGTGAATGATGGGAAAGACCTTCATGTCTCTGTCACTATGCCTTCCATTGAGGTGGGAACAGTTGGAGGGGGCACACAGCTTGCATCACAATCAGCTTGTTTGAATTTACTTGGTGTGAAGGGTGCTAGTAAAGAATCACCAGGAGCAAATTCAAGGCAATTGGCAACAATAGTAGCTGCTTCAGTGCTTGCCGGAGAGCTTTCACTCATGTCCGCAATTGCAGCCGGTCAGCTTGTCAAGAGTCACATGAAATACAACAGATCTACTAAAGATGTCACCAAAATTGCATCATGA 1713 0.4472 MDVHQRSLKTVDGSALSGKTSKTKNLKHDSQSQPSLYLTNAVFFGLFFSVAYFLLHRWREKIRTSTPLHVLTISEIVAVLSLVASFFYLMVFFGIGFILHPFAAFRAVQYDEEDAAEIDKTSGSCLAEVSPKLPPLPPNIGANKVAPAPVLISSDDEEVVQAVVSGSIPSYSLESKLGDCRRAAAIRNQAVERVTGRSLEGLPMENFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGKEFTVPMATTEGCLVASTNRGCKAIYVSGGATAVVLRDGMTRAPVVRFNSAIRASQLKFFLEDPQNFDSLAHTFNKSSRFARLQNIKSTMAGKNLYIRFTCSTGDAMGMNMVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVESLVELNMLKNLTGSALAGALGGFNAHASNIVSAIYLATGQDPAQNVESSHCMTMMEAVNDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRQLATIVAASVLAGELSLMSAIAAGQLVKSHMKYNRSTKDVTKIAS 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06275 570 Gene3D - 152 226 IPR023282 GO:0004420
Vifa1g06275 570 Pfam Hydroxymethylglutaryl-coenzyme A reductase 184 560 IPR002202 GO:0004420|GO:0015936
Vifa1g06275 570 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 491 498 IPR023076 GO:0004420
Vifa1g06275 570 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 156 560 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vifa1g06275 570 CDD HMG-CoA_reductase_classI 157 560 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vifa1g06275 570 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 19 564 IPR002202 GO:0004420|GO:0015936
Vifa1g06275 570 MobiDBLite consensus disorder prediction 1 29 - -
Vifa1g06275 570 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 277 393 IPR009023 -
Vifa1g06275 570 MobiDBLite consensus disorder prediction 10 29 - -
Vifa1g06275 570 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 545 558 IPR023076 GO:0004420
Vifa1g06275 570 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 380 555 - -
Vifa1g06275 570 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 425 451 IPR002202 GO:0004420|GO:0015936
Vifa1g06275 570 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 243 263 IPR002202 GO:0004420|GO:0015936
Vifa1g06275 570 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 334 352 IPR002202 GO:0004420|GO:0015936
Vifa1g06275 570 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 374 399 IPR002202 GO:0004420|GO:0015936
Vifa1g06275 570 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 216 237 IPR002202 GO:0004420|GO:0015936
Vifa1g06275 570 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 479 500 IPR002202 GO:0004420|GO:0015936
Vifa1g06275 570 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 152 226 - -
Vifa1g06275 570 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 277 393 - -
Vifa1g06275 570 Gene3D - 227 547 IPR023074 GO:0004420
Vifa1g06275 570 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 156 560 IPR002202 GO:0004420|GO:0015936
Vifa1g06275 570 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 336 350 IPR023076 GO:0004420
Vifa1g06275 570 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 150 549 IPR009029 GO:0015936|GO:0016616
Vifa1g06275 570 Gene3D - 277 393 IPR009023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06275 Vifa-Chr1 980332042 980334037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06275 36 566 Lipid Metabolism Gene Families AT1G76490 72.472 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06275 K00021 - gmx:100790033 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02744 1 428516731 428520007 Vifa1g06275 1 980332042 980334037 ECH
Vifa1g06275 1 980332042 980334037 Vifa1g06275 1 980332042 980334037 ECH