Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06235 ATGGAAGCCACCGCCGCTTCACCGCCGCCAACAGCACCCACCCGCAATGCAGAGAGAACTTCAATCACCACCAGTCCTTCTTCCAACCACCAACTTCACCTTCGATTCCCCCTCCGCAACTCCAAACACAAAAACCTCTCTCTCATTCACAACTTCCCTCATCACCCCTCTTCACAACTTGTCACTCCTCCGAGTAACAAAACGGAAAAGAAGAACAAGAGAACAAAATCTGCTTCAACTTCACACGTCTTGCCTTTGATGGACGCCCTTCACTTTCCTATATCCATCGACGTATACACCTCTTTGGTCAAAGAATGCACTCTTTCTGGTATCCCAGAAACCGCAATCGAGTTGCATACTCACATAAAAAAGAGTGCCATCGAACCTCCGTTGCCCTTGATCAATCGGATTCTCATCATGTTTGTTTCGTGCGGTTTGTTGGACGATGCACGCCATGTGTTTGACTCAATGCATGTGAGGGATTTTCATTCTTGGGCAATTTTGTTTGTTGCCTATTATGAAAATTCTGATTATGGGAATGCTACAGATGTTTTTCGCGGCATGTTATGTCAATTGGGTGTGATGGGGTTTCCTTTTCCTCCATGGATTTGGTCTTGTCTTCTCACGGTTTGTGCTAGCACTGTGAATGTCTCTCTAGGATTGCAAGTTCATGGATGTTTATTAAAGTTGGGGGCATGTGACCATGTGCTTATAAGTAGCTCTTTGATCAGATTTTATGGGAGATTCAAGTGTTCGGAAGATGCAAACGTTATTTTTAATAAAGCGTCGCGGCATAACACGTTGACTTGGACTGCTAAAATTGTTAGTGGTTGTAAAGAAAGGCATTTCTCTGAGGCTCTTGGTGATTTTAAGGAGATGGGAAGGGTAGGGGTAAAGAAGGACAGTTTTACATTTTCCAGTGTTCTCAAGGCATGTGGAAGGATGCAGAATCATGGAAGCTGCGGTGAACAGGTTCATGCTGATACCATCAAACTAGGATTCGACTCGGATAGCTATGTGCAGTGTAGTCTGATAGCCATGTATGGAAGAAGTGGGTTACTACGAGATGCAAGACTGGTGTTTGAAACGACCCGAAATGAAAGAAATGTCGATAGTTGGAATGCCATGCTTATGGGTTACATACAGAATGGTTTGTACATTGAAGCTGTTAAGTTTGTGTATCAGATGAAAGCTGCTAGAGTGCATCCACATGAATCACTGCTTGATAAACTAAGAATTGCTTGTGGCAGTTCTACCTTTTAA 1263 0.4363 MEATAASPPPTAPTRNAERTSITTSPSSNHQLHLRFPLRNSKHKNLSLIHNFPHHPSSQLVTPPSNKTEKKNKRTKSASTSHVLPLMDALHFPISIDVYTSLVKECTLSGIPETAIELHTHIKKSAIEPPLPLINRILIMFVSCGLLDDARHVFDSMHVRDFHSWAILFVAYYENSDYGNATDVFRGMLCQLGVMGFPFPPWIWSCLLTVCASTVNVSLGLQVHGCLLKLGACDHVLISSSLIRFYGRFKCSEDANVIFNKASRHNTLTWTAKIVSGCKERHFSEALGDFKEMGRVGVKKDSFTFSSVLKACGRMQNHGSCGEQVHADTIKLGFDSDSYVQCSLIAMYGRSGLLRDARLVFETTRNERNVDSWNAMLMGYIQNGLYIEAVKFVYQMKAARVHPHESLLDKLRIACGSSTF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06235 420 MobiDBLite consensus disorder prediction 48 66 - -
Vifa1g06235 420 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 321 420 - -
Vifa1g06235 420 Gene3D Tetratricopeptide repeat domain 193 318 IPR011990 GO:0005515
Vifa1g06235 420 Gene3D Tetratricopeptide repeat domain 70 192 IPR011990 GO:0005515
Vifa1g06235 420 NCBIfam pentatricopeptide repeat 372 403 IPR002885 -
Vifa1g06235 420 MobiDBLite consensus disorder prediction 1 32 - -
Vifa1g06235 420 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 23 407 IPR046960 GO:0003723|GO:0009451
Vifa1g06235 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Vifa1g06235 420 MobiDBLite consensus disorder prediction 48 80 - -
Vifa1g06235 420 Gene3D Tetratricopeptide repeat domain 319 418 IPR011990 GO:0005515
Vifa1g06235 420 Pfam PPR repeat 372 398 IPR002885 -
Vifa1g06235 420 MobiDBLite consensus disorder prediction 9 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06235 Vifa-Chr1 974763773 974765035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06235 293 420 Glycoside Hydrolase AT3G49170 36.641 1.71e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06235 - - tpra:123907457 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06235 1 974763773 974765035 Vifa1g06235 1 974763773 974765035 ECH