Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06234 ATGGTCCCAAAACTCATCATAATAACATGTAAACAACCCCCAACTTCAATCCCTTCATTCAACATCTCATCCATCAAAATCAAAGAGAAACCCCAAACACTAAAAACCACCACCACAACACCCTCCACAAAAACAATACCTCCACCCACCACCACCACAACCACCACCAAAAACACAAACAAAAAACCAGAAACATCATTCCCTGGACTCCTATTCAACACATTCGACGACATCATCAACAACTTCATCGACCCACCAATAAAGCCAGCCCTAGATCCAAGACATGTTCTATCTCAAAACTTCGCTCCAGTCCTAACCGAACTCCCTCCAACACAATGCGAAATCATCAAAGGCACACTCCCACCGTCACTCAACGGCGCTTACATAAGAAACGGCCCAAACCCCCAGTTCCTTCCACGTGGACCCTACCACCTCTTCGACGGTGACGGCATGCTTCACGCCATCAAAATCTCAAACGGAAACGCCACACTCTGTAGCCGTTACGTCAAAACCTACAAATACAAAACCGAAAACGACGCCGGTTACCCTCTCTTCCCCAACGTCTTCTCCGGTTTCAACTCGCTTATCGCCTCCGCCGCACGTGGATCCATAACCGCCGCACGTGTTTTAACCGGTCAGTATAATCCATCCAACGGCATTGGATTAGCGAACACAAGCTTAGCTCTGTTTGGTAACCGTCTTTTCGCTCTCGGAGAATCCGATCTTCCTTATGAAATCAATCTAACCCCAAACGGTGACATCCAAACAATCGGCCGTTACGATTTTAACGGTAAACTCTCCATGAGTATGACGGCGCATCCCAAAATTGACGCCGACACCGGTGAAGCTTTCGCGTTTCGTTACGGTCCTATTCCACCGTTTTTAACTTACTTCCGTTTCGACTCTAACGGAGTTAAACACGACGACGTCCCCGTTTTCTCCTTGACAACACCTTCGTTTCTTCATGATTTCGCTATTACGAAAAAGTACGCTGTGTTCGCTGATATACAGCTTGGGATGAATCCTCTTGATATGATCTCCGGTGGCTCTCCGGTTGGTTCCGATCCTTCGAAGATTTCGAGGATCGGGATTCTTCCTCGTTACTCTAACAACGAGAGGAAGATGAAGTGGTTTAATGTGCCAGGGTTTAATATTGTTCACGCGATTAACGCGTGGGATGAGGAAGATGGAGAAACGGTTACTCTTATTGCGCCGAATATTCTCTCTGTGGAGCATACTATGGAGAGATTGGATCTTGTTCATGCGATGATCGAGAAAGTGAAGATTAACGTTGAGACTGGGATTATTTCACGACAACCGTTATCAGCGAGGAATCTTGATTTCGCGGTGATAAATGGTGATTATATGGGGAAGAGGAATAGGTTTGTTTACGCTGCGATTGGGGATCCGATGCCGAAGATTTCGGGGGTAGTTAAGATTGATGTGTTGAAGGGAGAGGAAGTTGGGTGTAGGATGTTTGGAGAGGGTTGTTACGGTGGTGAACCGTTTTTTGTGGCGAGGGAAGGTGGGGGTGAGGAGGATGATGGTTATTTGGTTAGTTATGTGCATGATGAGAAGAAGGGAGAGTCGAGGTTTTTGGTGATGGATGGTAAGTCGGCGGAGTTGGAGGTTGTGGCGGAGGTGAAGTTGCCGCGACGGGTGCCGTATGGTTTTCATGGGTTGTTTGTGAGGGAGAGTGACATTACAAAGTTGTCGCTGTAG 1722 0.4715 MVPKLIIITCKQPPTSIPSFNISSIKIKEKPQTLKTTTTTPSTKTIPPPTTTTTTTKNTNKKPETSFPGLLFNTFDDIINNFIDPPIKPALDPRHVLSQNFAPVLTELPPTQCEIIKGTLPPSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKISNGNATLCSRYVKTYKYKTENDAGYPLFPNVFSGFNSLIASAARGSITAARVLTGQYNPSNGIGLANTSLALFGNRLFALGESDLPYEINLTPNGDIQTIGRYDFNGKLSMSMTAHPKIDADTGEAFAFRYGPIPPFLTYFRFDSNGVKHDDVPVFSLTTPSFLHDFAITKKYAVFADIQLGMNPLDMISGGSPVGSDPSKISRIGILPRYSNNERKMKWFNVPGFNIVHAINAWDEEDGETVTLIAPNILSVEHTMERLDLVHAMIEKVKINVETGIISRQPLSARNLDFAVINGDYMGKRNRFVYAAIGDPMPKISGVVKIDVLKGEEVGCRMFGEGCYGGEPFFVAREGGGEEDDGYLVSYVHDEKKGESRFLVMDGKSAELEVVAEVKLPRRVPYGFHGLFVRESDITKLSL 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06234 573 Pfam Retinal pigment epithelial membrane protein 101 563 IPR004294 GO:0016702
Vifa1g06234 573 MobiDBLite consensus disorder prediction 31 65 - -
Vifa1g06234 573 PANTHER BETA-CAROTENE DIOXYGENASE 104 564 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06234 Vifa-Chr1 974688368 974690089 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06234 K09840 - gmx:100777875 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06234 1 974688368 974690089 Vifa1g06234 1 974688368 974690089 ECH