Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06203 ATGGTGCACGCTAGGGTTTTCGGAGCATTTGCCGGCAGAGCGCTCATGGCGGCTGCGGCGAAGGGTGCTGCTAAGAAAACTGCTGCTTCCGCCGCAGCTGCCTCCACAACTGTCGCGAAGAAAACGCCCGTGAGCAGAGGTAGCGGAGGCATACAGAAAGTCGTTCCGGTCACTTCTGAGCTCGGGAAGTTCATCGGTTCACCTCAGGTTTCGAGAACCGAAGCCGTTAAGAAAGTGTGGGAATACATCAAGCTGCAGAATCTTCAGAATCCTAAAAACAAGAGGGAGATTTTTTGTGATGAAAAGCTGAAGACCATTTTCGATGGGAAAGATAAAGTAGTGTTCACTGAGATTGCCAGATTGCTGGCTAACCACTTTGTGAAATCGTCCTGA 393 0.5038 MVHARVFGAFAGRALMAAAAKGAAKKTAASAAAASTTVAKKTPVSRGSGGIQKVVPVTSELGKFIGSPQVSRTEAVKKVWEYIKLQNLQNPKNKREIFCDEKLKTIFDGKDKVVFTEIARLLANHFVKSS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06203 130 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 25 127 - -
Vifa1g06203 130 Pfam SWIB/MDM2 domain 55 126 IPR003121 -
Vifa1g06203 130 SUPERFAMILY SWIB/MDM2 domain 45 128 IPR036885 -
Vifa1g06203 130 CDD SWIB-MDM2_like 55 126 - -
Vifa1g06203 130 Gene3D SWIB/MDM2 domain 44 130 IPR036885 -
Vifa1g06203 130 SMART swib_2 51 130 IPR019835 -
Vifa1g06203 130 ProSiteProfiles SWIB/MDM2 domain profile. 50 128 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06203 Vifa-Chr1 969712353 969713758 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vifa1g06203 SWIB 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06203 - - gmx:100779127 147.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06203 1 969712353 969713758 Vifa1g06203 1 969712353 969713758 ECH