Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06200 ATGACATTATCCGAAGACGAAGACGAAAATCTAGCTCAGTTTCTGGAATCTGAAATCCTCTCCGAGGAAGAGGAGAATGTGGACGAACCAAAAGCGAAGAGAAAATGCATAGAAGAGGCTGAGAGTACTGATCAGGGTACCAAACAGGGTTCTGGTTCATCATCTGTGCCTAAGAACTATGGTGTCAATAATGCCGTGATGATGAGAAGGATTGAGACTGGTTCTTTCAGCAAAGTCCCACCAGAACTTTTCCATCACATCCTTAAATTTCTGTCATCTGAGGACCTTATTTCTTGTACCTTAGTCTGTAAGTTTCTAAGCTATGCTGCATCTGATGAAGCACTGTGGCGTCGCCTGTATTGTATGCGGTGGGGCCTTCTTCCCCCCACAAGGAAGATACGGGACTGCCCATGGAAAAAGCTATACATTCAGCGTGATGAAAAGGACATGGATGAACTCGTCAGAAGCTGCCAAAATGAGTTTAAGGAGTACTATATTCAAATGCAAACAGCTAAGAGAAGTCAAGCACCCCATCCTTCACAGTTGAAGGATGATAGCATTATTCTTGACAAAACATTAGCTGATCAAGTCTCATCATGGAAAAGCAGCAGGGGCCTCAGTGATACAGTGGTGACTGACCATGCTTGTTCTGGGAAGGCATGCACATACTACCAAATTGGAGATGTATTTATTTGTGAGAAGACCGGACAAGTTCATGTTTGTGATGAAACATGTAAAGAAGTAGTTATGGATCCCGCCGAGGAGATTTTGGTCTGTACAATATCAGGGCACTGTTTTGATGGATTATTATCGGCATCTGAAATGGAGCCCGATTTTGAGCAGCAGCAAGGTGTTGCAGTAGATGAGGAAGAACCATTTATGGGATCCGGCCGTTTTGCACGAGCTTATTTGTTGGGATACAATTGTGCTGATGAAAAAGAGCTTGAAGATACTTTGAGGTATTGCTGA 969 0.4345 MTLSEDEDENLAQFLESEILSEEEENVDEPKAKRKCIEEAESTDQGTKQGSGSSSVPKNYGVNNAVMMRRIETGSFSKVPPELFHHILKFLSSEDLISCTLVCKFLSYAASDEALWRRLYCMRWGLLPPTRKIRDCPWKKLYIQRDEKDMDELVRSCQNEFKEYYIQMQTAKRSQAPHPSQLKDDSIILDKTLADQVSSWKSSRGLSDTVVTDHACSGKACTYYQIGDVFICEKTGQVHVCDETCKEVVMDPAEEILVCTISGHCFDGLLSASEMEPDFEQQQGVAVDEEEPFMGSGRFARAYLLGYNCADEKELEDTLRYC 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06200 322 CDD F-box_AtSKIP31-like 76 121 - -
Vifa1g06200 322 Coils Coil 5 25 - -
Vifa1g06200 322 Pfam F-box-like 78 121 IPR001810 GO:0005515
Vifa1g06200 322 ProSiteProfiles F-box domain profile. 73 119 IPR001810 GO:0005515
Vifa1g06200 322 Gene3D - 62 151 - -
Vifa1g06200 322 SUPERFAMILY F-box domain 65 145 IPR036047 GO:0005515
Vifa1g06200 322 MobiDBLite consensus disorder prediction 26 42 - -
Vifa1g06200 322 SMART fbox_2 79 119 IPR001810 GO:0005515
Vifa1g06200 322 PANTHER F-BOX ONLY PROTEIN 3 4 320 - -
Vifa1g06200 322 MobiDBLite consensus disorder prediction 43 57 - -
Vifa1g06200 322 Pfam UL92 family 219 283 IPR004289 -
Vifa1g06200 322 MobiDBLite consensus disorder prediction 1 57 - -
Vifa1g06200 322 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g06200 322 FunFam F-box family protein-like 63 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06200 Vifa-Chr1 968980345 968983692 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06200 - - gmx:100778591 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06200 1 968980345 968983692 Vifa1g06200 1 968980345 968983692 ECH