Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06142 ATGGGTTTGCCAAGGTTTGGTCGGCCAAAGAACGCTGATGAATCGAGCTCTAACCTATTCGTAGCAAATTGTGGACCAGCCGTGGGAATTTCTGATGATGATATTGCTTCTGTTTTCTGCAAATTTGGGGAACTCAATGGAGTTTATGCAGCTGATGAGAGTGGCACACGTGTCATTGTATCTTATTCTGAAGCGAGTTCTGCACAATCTGCTTTAATGGCATTACATGGAAAACCTTGTGCTGAACTTGGAGGTCGTTCTTTGTATATTCGTTATTCAGTTCTTCAGCCAAATCCACAGGATCAAGTGAAGGACTTGGTTTCTGTATCTATGACAGCCTCAGAACTGAACATTCCTGGACTTTTCCTAGTGCATGACTTCGTTAGTGCTAAAGAAGAAGAGGAATTGCTCCAGGCTGTTGACAGTAGGCCTTGGAACTGTCTTGCCAAAAGAAGGGTTCAACACTATGGTTATGAGTTTTGTTATGATATTCGGAATGTTAATACAAAGCGATGCCTAGGCGAGCTTCCCTCATTTCTGTCTCCAATACTTGAAAGAATATCGTCATGCCCAACTTTCAAGAATGTTGACCCTGATAGCATAGTTTTGGACCAACTTACGGTAAATGAGTACCCACCTGGAGTGGGTTTATCGCCTCATATAGACACTCACTCTGCATTTGAAGATTTAATTTTCAGCCTTTCATTAGCAGGGCCTTGTATAATGGAATTCAGGCGATACGAAGATGGCGACTGGCGCCCTAAAGTTGCCTCAAGCACTGTTACAGAAGTAGAAAGTCCAGAAGATGGCTCGAACTGTATTAAGAGGGCTATCTATCTCCCCCCTAGATCTTTGCTACTTTTATCCAGCGAAGCACGATATGCATGGCATCATTACATTCCACACCACAAGGTTGACAAAGTGAATGGAAGAATCATCCGAAGGGCTTCAAGAAGGGTATCTTTTACGATTCGTAAGGTTAGAGCAGGTTTGTGCAAATGTGAATTTCCTCAGTATTGCGACTCTCAAAGATGA 1035 0.429 MGLPRFGRPKNADESSSNLFVANCGPAVGISDDDIASVFCKFGELNGVYAADESGTRVIVSYSEASSAQSALMALHGKPCAELGGRSLYIRYSVLQPNPQDQVKDLVSVSMTASELNIPGLFLVHDFVSAKEEEELLQAVDSRPWNCLAKRRVQHYGYEFCYDIRNVNTKRCLGELPSFLSPILERISSCPTFKNVDPDSIVLDQLTVNEYPPGVGLSPHIDTHSAFEDLIFSLSLAGPCIMEFRRYEDGDWRPKVASSTVTEVESPEDGSNCIKRAIYLPPRSLLLLSSEARYAWHHYIPHHKVDKVNGRIIRRASRRVSFTIRKVRAGLCKCEFPQYCDSQR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06142 344 Gene3D - 109 332 IPR037151 -
Vifa1g06142 344 Gene3D - 5 106 IPR012677 -
Vifa1g06142 344 FunFam ALKylated DNA repair protein AlkB homolog 114 331 - -
Vifa1g06142 344 PANTHER OXYGENASE-RELATED 106 340 IPR032857 GO:0070988
Vifa1g06142 344 Pfam 2OG-Fe(II) oxygenase superfamily 162 325 IPR027450 -
Vifa1g06142 344 SMART rrm1_1 18 91 IPR000504 GO:0003723
Vifa1g06142 344 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 202 328 IPR005123 -
Vifa1g06142 344 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Vifa1g06142 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Vifa1g06142 344 SUPERFAMILY Clavaminate synthase-like 118 328 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06142 K10770 - gmx:100777529 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06142 1 959098462 959101367 Vifa1g06142 1 959098462 959101367 ECH