Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06080 ATGATTTTTGAGCCTATTTTGGATGATGGAGTGTTTCGTTTTGATTGTTCTGTACATGATAGAGATGCAGCATATCCTAGTATTTCTTTTCTGAATAGCAAGGAAAGAGAGACTCCCATCACTAATACTCACAAGGTTCCTTCGTATATCCCTAGCTTCGAGTGCCTTCTAGAACAGCAAGTTGTTCAACTTGAGCTACCTATAGGTACCTCCCTCTATGGAACTGGAGAAGTTGGTGGACAACTTGAGAGAACAGGCAAAAGAGTTTTCACATGGAACACGGACGCATGGGGTTATGGTCCTGAAACTGCATCCTTATACCAATCACATCCGTGGGTGTTAGCTGTTCTTCCAAATGGAGAGGCCCTAGGAATTCTTGCTGACACTACAAGGCGCTGTGAGATAGATCTGAGGAAAGAATCAATAGTACATTTCATTGCTCCATCCTCATTCCCTGTCATTACATTTGGTCCCTTTGCTTCACCTACGGAGGTTTTGATATCTCTATCAAAAGCAATTGGAACTGTGTTTATGCCTCCAAAGTGGTCATTAGGTTATCAACAATGCCGTTGGAGCTATTTATCTGATCAGAGAGTTCTGGAGGTTGCAAAAACATTTCGGGAAAAGAGCATACCTTGTGATGTGATATGGATGGATATCGACTACATGGACGGTTTTCGTTGTTTTACCTTTCACAGGGAGCAATTTAAGGATCCCAAGTCTTTAGTGAAAGATCTCCACTATAGTGGTTTCAAAGCTATTTGGATGCTTGATCCTGGGATCAAGCAGGAAAGAGGTTATTTTGTATATGATAGTGGTTCTGAAAATGATGTTTGGGTCCAAAAAGCTGATGGAACACCTTTTGTTGGGGATGTGTGGCCTGGGCCTTGTGTCTTCCCTGACTACACACAGTCAAACGTTCGTGCATGGTGGGGAAATTTAGTTAAGGACTTCGTTTCCAATGGTGTTGATGGTATATGGAATGATATGAACGAACCAGCTGTCTCTGAGGTTGCAATGAACACAATGCCTGGTAGCAATGTACATAGAGGTGATGGTGAACTTGGAGGTTGTCAGAATCATTCTTTCTATCATAATGCGTATGGTCTGCTGATGGCAAGATCAACCCATGAAGGCATGAAACTAGCTAATGAAGACAAGCGTCCTTTTGTTCTCACCAGAGCTGGATTTATTGGCAGCCAAAGGTATGCTGCAACATGGACGGGAGATAATCTTTCAACCTGGGAGCATCTTCATATGAGTATCTCCATGGTACTACAACTGGGACTCAGTGGTCAGCCACTTTCAGGTCCTGATATTGGTGGATTTGCGGGCAATGCTACACCGAAGCTTTTTGGAAGGTGGATGGGTGTAGGTTCCTTGTTTCCCTTTTGCCGAGGACATTCTGAAGCTGGATCCACTGATCATGAACCCTGGTCCTTTGGCGAAGAGTGTGAAGAAGTTTGCCGATTGGCATTGAAGAGGCGCTACCGCCTTATCCCCCACATCTACACACTTTTTTATTTTGCACATACAAGGGGCACTCCAGTGGCAACCCCTACTTTTTTTGCTGATCCAAAAGATCATAGCTTGAGGAAACTTGAAAATTCATTTTTGCTTGGTCCAGTTTTAGTGTATGCAAGCACCACGCGCAATCAGGGGTTGGATAAGTTGGAGGTTACTCTACCAAAGGGGATATGGCTGGGTTTTGATTTCAGTGATGCACATCCGGATTTGCCTGCATTATATTTGAAAGGGGGGTCAATTATTCCTGTGGGCCTCCCTCTTCAGCATGTTGGAGAAGCTTCTCCATCAGACGAATTGACACTTCTCGTTGCTCTAGATGAATATGGTAAAGCCGAAGGTTTTCTATTTGAGGATGATGGTGATGGATATGAATTCACTAAAGGCAATTATTTATTAACACATTATGTTGCTGAACTTCAATCATCGGTTGTTACTGTGAGTGTGCACAAGACTGAAGGATCGTGGAAAAGACCTACACGCCGCCTCCACATTCAATTATTACTAGGTGGGGGTGCAATGCTTGATACATGGGGAGTGGATGGGGAAGTTCTGCATGTAAATGTGCCTTCAGAGGAGGAGGTGTCGAAGCTGGTGTTGACTAGTAAGAAACAACTCAAGGAACATTTGCAAAAAGCAATTCAGATTCCTGATGTAGAAGACAGAATTTCAGGAACTCCTATTGAACTGAAAAGTAGTGTCTGGCTTCTTAAAGTTGTTCCCTGGATTGGGGGTAGAATCATCTCCATGATACACTCTCCTTCAGGGATACAGTGGCTCCATAGAAAGATTGAAATCAGTGGCTATGAGGAGTACAGTGGTACTGAGTATCGGTCTGCTGGGTGTTCTGAGGAATATTCTATAATCAATCGAGAACTCGGGCATGCTGGAGAGGAGGAATCTGTGGTATTGGAGGGTGACATTGGTGGAGGATTGGTTCTTCAACGGAAGATATATTTTCCCAAGAACTCTGCCAACATCATCCAAATAAACTCTAGCATAACAGCACACAGCGTCGAAGCTGGTACTGGAGGCTTCTCAAGGTTGGCATGCTTAAGAATTCACCCAACATTCATTCTTTTGCACCCATCAGAATCTTTTGTCTCATTTACTTCAATTGATGGATCGAAGCACGAAGTCTTTCCAGATGATAGGGAGCAAATATTTGAAGGATGCCTTATTCCCAATGGTGAGTGGAGGTTTGTTGATAAATGTCTTGGCTTGGCACTGGTCAATCGATTTAATGTTAATGAGGTATTGAAGTGTCTTGTTCACTGGGATTCTGGCACTGTCAACTTGGAGCTTTGGTCTGAGAACAGATCTGTATCAGAGCAATCTCCTATTCAAATCTCTCATCAGTACGAGGTTATACGAATTCCTTGA 2907 0.4334 MIFEPILDDGVFRFDCSVHDRDAAYPSISFLNSKERETPITNTHKVPSYIPSFECLLEQQVVQLELPIGTSLYGTGEVGGQLERTGKRVFTWNTDAWGYGPETASLYQSHPWVLAVLPNGEALGILADTTRRCEIDLRKESIVHFIAPSSFPVITFGPFASPTEVLISLSKAIGTVFMPPKWSLGYQQCRWSYLSDQRVLEVAKTFREKSIPCDVIWMDIDYMDGFRCFTFHREQFKDPKSLVKDLHYSGFKAIWMLDPGIKQERGYFVYDSGSENDVWVQKADGTPFVGDVWPGPCVFPDYTQSNVRAWWGNLVKDFVSNGVDGIWNDMNEPAVSEVAMNTMPGSNVHRGDGELGGCQNHSFYHNAYGLLMARSTHEGMKLANEDKRPFVLTRAGFIGSQRYAATWTGDNLSTWEHLHMSISMVLQLGLSGQPLSGPDIGGFAGNATPKLFGRWMGVGSLFPFCRGHSEAGSTDHEPWSFGEECEEVCRLALKRRYRLIPHIYTLFYFAHTRGTPVATPTFFADPKDHSLRKLENSFLLGPVLVYASTTRNQGLDKLEVTLPKGIWLGFDFSDAHPDLPALYLKGGSIIPVGLPLQHVGEASPSDELTLLVALDEYGKAEGFLFEDDGDGYEFTKGNYLLTHYVAELQSSVVTVSVHKTEGSWKRPTRRLHIQLLLGGGAMLDTWGVDGEVLHVNVPSEEEVSKLVLTSKKQLKEHLQKAIQIPDVEDRISGTPIELKSSVWLLKVVPWIGGRIISMIHSPSGIQWLHRKIEISGYEEYSGTEYRSAGCSEEYSIINRELGHAGEEESVVLEGDIGGGLVLQRKIYFPKNSANIIQINSSITAHSVEAGTGGFSRLACLRIHPTFILLHPSESFVSFTSIDGSKHEVFPDDREQIFEGCLIPNGEWRFVDKCLGLALVNRFNVNEVLKCLVHWDSGTVNLELWSENRSVSEQSPIQISHQYEVIRIP 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06080 968 Pfam Galactose mutarotase-like 71 136 IPR025887 -
Vifa1g06080 968 Gene3D - 499 582 IPR013780 -
Vifa1g06080 968 SUPERFAMILY Glycosyl hydrolase domain 516 573 - -
Vifa1g06080 968 Pfam Glycosyl hydrolases family 31 161 590 IPR000322 GO:0004553|GO:0005975
Vifa1g06080 968 Pfam Domain of unknown function (DUF5110) 607 675 IPR033403 -
Vifa1g06080 968 SUPERFAMILY (Trans)glycosidases 171 514 IPR017853 -
Vifa1g06080 968 SUPERFAMILY Galactose mutarotase-like 61 146 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vifa1g06080 968 CDD GH31_glucosidase_II_MalA 174 514 - -
Vifa1g06080 968 CDD GH31_N 62 174 - -
Vifa1g06080 968 PANTHER ALPHA-GLUCOSIDASE 65 663 - -
Vifa1g06080 968 ProSitePatterns Glycosyl hydrolases family 31 active site. 325 332 IPR030458 -
Vifa1g06080 968 Gene3D Glycosidases 177 498 - -
Vifa1g06080 968 Gene3D glycosyl hydrolase (family 31) 22 156 - -
Vifa1g06080 968 Gene3D - 587 724 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06080 Vifa-Chr1 949498888 949507582 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06080 1 968 Glycoside Hydrolase AT3G23640 70.872 0.0 1489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06080 - - gmx:100809690 1690.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06080 1 949498888 949507582 Vifa1g06080 1 949498888 949507582 ECH