Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06078 ATGATGATGATGAGGCATGGTGGTAGTGGTGCTATGAACACTGCTATGTTGTTGGCTAAGAAAGGTTTACTAGGTGGTGAAGTGGTTGCTCCAAACAAATGGGGTTCTCTGGTTATCAGGAATGGAAGCACTTTTGCTGCTAATTTGTCAGATCCAAAGGAGAATAATAACAATCTTGAGAAAACTTCATCTTCTCAAGGTAGTGCTGGGGCTAATGGTGGGAACAAAGATGAGAAAGGAATAATGAGCTATTGGGGTATTCGCCCCTCAAAGATCACAAAACAAGATGGTACTGAATGGAAGTGGAATTGCTTCAGGCCATGGGAGACATACAAAGCAGATGTTACAATTGATCTGACCAAACATCACGCACCAACAACTTTTCTGGACAAAATGGCTTATTGGACTGTCAAGAGTCTTAGGTACCCAACAGATCTCTTTTTCCAGAGAAGGTATGGATGCCGAGCAATGATGCTTGAGACAGTTGCCGCTGTTCCTGGCATGGTGGGAGGGATGCTACTTCACTGCAAATCGTTGCGCAGATTCGAGCACAGTGGTGGATGGATCAAGGCATTGCTAGAAGAAGCCGAGAACGAGCGGATGCATCTAATGACATTCATGGAAGTTGCGAAACCGAGGTGGTATGAGCGTGCTCTTGTCATAACTGTGCAAGGTGTTTTCTTCAATGCTTATTTCTTAGGCTATTTGGTGTCACCTAAATTCGCTCACCGTATGGTTGGTTACCTTGAGGAAGAAGCTATTCATTCTTATACTGAGTTTTTGAAGGAGCTTGATAAAGGGAATATAGAAAATGTTCCTGCTCCAGCTATTGCCATTGACTATTGGCAGCTTCCACCAAATTCCACGTTGAGGGATGTTGTTATGGTTGTCAGAGCTGATGAAGCGCATCATCGCGATGTCAACCACTTTGCATCAGATATACATTACCAAGGAAGAGAATTAAGAGAGGCTGCTGCTCCAATTGGTTATCACTAG 996 0.4378 MMMMRHGGSGAMNTAMLLAKKGLLGGEVVAPNKWGSLVIRNGSTFAANLSDPKENNNNLEKTSSSQGSAGANGGNKDEKGIMSYWGIRPSKITKQDGTEWKWNCFRPWETYKADVTIDLTKHHAPTTFLDKMAYWTVKSLRYPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPRWYERALVITVQGVFFNAYFLGYLVSPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWQLPPNSTLRDVVMVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06078 331 FunFam Ubiquinol oxidase 84 328 - -
Vifa1g06078 331 Pfam Alternative oxidase 120 311 IPR002680 GO:0009916
Vifa1g06078 331 CDD AOX 148 315 IPR002680 GO:0009916
Vifa1g06078 331 PANTHER ALTERNATIVE OXIDASE 49 331 IPR002680 GO:0009916
Vifa1g06078 331 MobiDBLite consensus disorder prediction 47 72 - -
Vifa1g06078 331 MobiDBLite consensus disorder prediction 47 76 - -
Vifa1g06078 331 Gene3D Alternative oxidase 83 327 IPR038659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06078 Vifa-Chr1 949146989 949148247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06078 39 331 Miscellaneous Gene Families AT3G22370 83.729 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06078 K17893 - gmx:547924 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06078 1 949146989 949148247 Vifa1g06078 1 949146989 949148247 ECH