Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06077 ATGGATTCTTCATCACAGTGTCCACCCTTTGAATATTCTAGCAAGTACTATCATGTGTCTGAAAATGGAGGTGGATGTGTGAGACAAACAAGTTTCTTTCAAGGAAAACCTCTTCTTAACCAAGGAGTTGGATATTCAATCATTCTTGGTTTTGGTGCTTTCTTTGCTCTCTTCACCTCTTTCTTGGTATGGCTGGAGAAAAGGTATGTCGGCTCACGCCACACCTCTGAATGGTTCAATACAGCAGGAAGAAATGTTAAGACAGGACTCATTGCTAGTGTCATTGTGTCTCAGTGGACTTGGGCTGCTACAATCCTGCAAAGCTCGAATGTTGCTTGGGAGTATGGAGTTAGTGGACCTTTCTGGTATGCTAGTGGAGCCACTATTCAAGTGATGTTATTTGGAATTATGGCTATAGAGATTAAAAGAAAGGCTCCTTATGCCCATACCGTGTGCGAAATTGTCAAAGCCCGTTGGGGGACTTCAGCACACATTGTATTCCTTTTCTTCTGCTTCATGACAAATATAATCGTAACGGCGATGTTACTTCTTGGTGGTTCTGCTGTTGTAAATGCATTAACTGGAGTCAATATTTATGCTGCTAGCTTTCTAATACCACTTGGAGTAATTGTCTATACACTAGCTGGTGGATTAAAGGCCACATTCTTAGCAAGCTATATACATTCTGTCATAGTGCACGTTGTTTTGGTCATTTTTGTCTACCTTGTCTATACTTCTAGCAGCAAGCTTGGTAGTCCGAGTGTCGTTTACAATCGCTTGCTCGAGGTTGCGAGCAAATCAAGAACATGTCAAGATCCTATATCACACCATGGGCAATCTTGTGGTCCTGTTAGTGGAAATCACAAAGGCTCTTACTTAACAATGCTTAGTTCAGGTGGATTAGTTTTTGGGATTATTAACATTGTTGGAAACTTTGGCACCGTGTTTGTTGACAATGGATATTGGGTGAGTGCTATTGCAGCAAGACCTTCATCAACTCATAAGGGCTACTTGTTGGGAGGTTTGGTCTGGTTTGCAGTGCCATTTTCTTTGGCTACCGCGCTTGGTTTGGGAGCACTAGCCCTTGATTTACCACTAAACGAAAGTGAAGCAGGTCGCGGACTTGTTCCACCTGCAACTGCTGTAGCTTTGATGGGGAAAGGTGGATCAGTTCTTCTTCTTACCATGCTTTTTATGGCGGTGACTTCTGCTGGTTCATCAGAGCTAATTGCGGTGTCGTCATTATGCACATATGATATTTATAGAACTTACATAAACCCTAATGCAAGTGGAAAGAAAATCCTCAAAGTATCAAGAGGAGTTGTCCTGGGATTTGGATGTTTCATGGGAATGTTAGCAGTTATACTAAACAAAGCAGGAGTTTCTTTAGGATGGATGTACCTTGCAATGGGAGTTTTGATTGGTTCAGCAGTTATTCCTATTGCTTTCATGCTTCTATGGAGAAAAGCAAATGCAATCGGAGCCATTTTAGGAACGGTATTCGGTTGCGTTCTTGGAATAATCACATGGTTGTCTGTTACAAAAATAGAGTATGGAAAGATAAACCTTGATACAAGTGGAAGAAATGCACCAATGCTTGCTGGAAACCTTGTTTCTATATTAACAGGTGGAGGTGTTCATGCTGTATGTAGCATGTTGTGGCCTCAGAACTATGATTGGAGCACTACTAGGCAAATCACTGTGGTTGAAAAGGAAAAGACTGATTTGCCAGTGGAAGAGTTTAAAGAAGAAAAGTTAATAAAGGCTAAAGTATGGATTGTGAAGTGGGGTGTTGGTTTTACTGTTTTGATAGTTATACTATGGCCTATTCTATCCCTCCCAGCAGGGGAGTTCAGCAAAGGATACTTCTATTTTTGGGCAGTAATTGCTATAGGATGGGGAACAATTGGTTCTGCTGTGATAATTGCTTTACCAATAATAGAGAGCTGGAATACCATCCAAACTGTCATTCTAGGAATGTGTACTAATGACAGACTCATGGAAAAGATGGATGAGTTGAATTTCAAGTTGCATACAATCATACAGGCAGTTCCAGAAGCAGAGAGACTTTACTTGCTTGAGAAGGAAAAAACCAAAAAATCAGAAGCCTCGGAACAACAATCTTTTTCACTTCCTAGCTAA 2142 0.4099 MDSSSQCPPFEYSSKYYHVSENGGGCVRQTSFFQGKPLLNQGVGYSIILGFGAFFALFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVMLFGIMAIEIKRKAPYAHTVCEIVKARWGTSAHIVFLFFCFMTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTSSSKLGSPSVVYNRLLEVASKSRTCQDPISHHGQSCGPVSGNHKGSYLTMLSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATALGLGALALDLPLNESEAGRGLVPPATAVALMGKGGSVLLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPNASGKKILKVSRGVVLGFGCFMGMLAVILNKAGVSLGWMYLAMGVLIGSAVIPIAFMLLWRKANAIGAILGTVFGCVLGIITWLSVTKIEYGKINLDTSGRNAPMLAGNLVSILTGGGVHAVCSMLWPQNYDWSTTRQITVVEKEKTDLPVEEFKEEKLIKAKVWIVKWGVGFTVLIVILWPILSLPAGEFSKGYFYFWAVIAIGWGTIGSAVIIALPIIESWNTIQTVILGMCTNDRLMEKMDELNFKLHTIIQAVPEAERLYLLEKEKTKKSEASEQQSFSLPS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06077 713 NCBIfam sodium/solute symporter 79 502 IPR001734 GO:0016020|GO:0022857|GO:0055085
Vifa1g06077 713 CDD SLC5sbd_DUR3 45 554 - -
Vifa1g06077 713 PANTHER - 15 701 IPR031155 GO:0015204|GO:0016020|GO:0071918
Vifa1g06077 713 FunFam Urea active transporter 67 577 - -
Vifa1g06077 713 ProSiteProfiles Sodium:solute symporter family profile. 44 516 IPR001734 GO:0016020|GO:0022857|GO:0055085
Vifa1g06077 713 Pfam Sodium:solute symporter family 80 502 IPR001734 GO:0016020|GO:0022857|GO:0055085
Vifa1g06077 713 Gene3D Sodium/glucose cotransporter 68 611 IPR038377 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06077 Vifa-Chr1 948998974 949002273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06077 5 702 Organic Solute Cotransporters AT5G45380 77.809 0.0 1111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06077 K20989 - gmx:100784391 1272.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06077 1 948998974 949002273 Vifa1g06077 1 948998974 949002273 ECH