Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06048 ATGGGGGAGAACCCCGGAAGTGGGAGCCAGTATGTCGCAGTAGGTGAATCGGCTTCCCCGAAGGCAACAAATCATATGAGGAAAGTTTCAGTTTTACCTCTTGTGTTTCTCATCTTCTATGAGGTATCAGGAGGGCCTTTTGGTGTTGAGGATACTGTGAAAGCAGCTGGTCCTTTGTTAGCTTTACTTGGATTTTTGGTTTTTCCGTTTATATGGAGTGTTCCGGAAGCTTTGATAACGGCTGAAATGGGTACCATGTTCCCTGAAAATAGTGGTTATGTTGTTTGGGTTTCGACTGCTTTGGGTCCGTTTTGGGGGTTTCAGCAGGGTTGGATGAAGTGGCTTAGTGGCGTGATTGACAATGCTTTGTATCCTGTTTTGTTTCTTGATTATCTTAAGTCTGCGATTCCGGTTATAGGTGGTGGTTTGCCTAGAGTTTTCGCGACGTGGGGTTTGACCGTAGTTCTCACTTACTTGAACTACAGAGGTTTGACCATTGTTGGGTTTGCTGCTGTTTGTTTAGGGATTTTCTCGCTGCTTCCTTTTGTTGTCATGGGGTTTATGTCGATTCCAGAAATGAAACCTGCAAGATGGTTTGAGACAAATTTGGATGATGTTAATTGGAATTTATATTTGAATACACTATTTTGGAATCTCAATTATTGGGACTCTATAAGCACTCTTGCTGGTGAAGTTGAAAATCCAAAGAAAACACTTCCGAAAGGTTTATTTTTCGCGTTGATTCTGGTTGTTGTGGCGTACTTCTTTCCTCTTTTGATTGGTACAGGCGCTCTTCCTGTTCAGCGCGAGTTATGGACTGACGGTTACTTCTCTGAAATTGCTATGGTCATTGGAGGAGTGTGGTTGAGATGGTGGCTTCAAGCTGCAGCTGCAATGTCAAACATGGGAATGTTTGTTGCTGAAATGAGCAGTGACTCCTTCCAGCTTCTAGGAATGGCTGAGAGAGGAATGTTGCCGGACTTTTTCACCAAGAGGTCTCGCCACGGAACGCCTCTTGCAGGAATACTATTTTCAGCCTCTGGTGTACTTTTACTATCATGGCTGAGTTTTCAAGAAATCGTAGCTGCAGAAAACTTCTTGTACTGTATTGGTATGATTCTAGAGTTTACCGCATTCATATTGTTGAAGATCAAACACCCGAATGCACCTCGGCCTTACAAAGTACCAGGCGGAACGGCGGGAGCAATTGTTATGTGCATCCCTCCTACAATATTGATCTGTGTGGTATTAGCTTTTTCAACCCTCAAAGTATTGGTTGTAAGCCTCATTGCTATGTCGATTGGCCTTATAATGCAGCCTTGTCTGAAATTTATGGAGAAAAAGAGATGGATGAAGTTCTCACATAGTTCTGAGCTACCTGATATTGTCAATGGAGAGCATAATAATTCTCTGTTGGGATAG 1422 0.4304 MGENPGSGSQYVAVGESASPKATNHMRKVSVLPLVFLIFYEVSGGPFGVEDTVKAAGPLLALLGFLVFPFIWSVPEALITAEMGTMFPENSGYVVWVSTALGPFWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPVIGGGLPRVFATWGLTVVLTYLNYRGLTIVGFAAVCLGIFSLLPFVVMGFMSIPEMKPARWFETNLDDVNWNLYLNTLFWNLNYWDSISTLAGEVENPKKTLPKGLFFALILVVVAYFFPLLIGTGALPVQRELWTDGYFSEIAMVIGGVWLRWWLQAAAAMSNMGMFVAEMSSDSFQLLGMAERGMLPDFFTKRSRHGTPLAGILFSASGVLLLSWLSFQEIVAAENFLYCIGMILEFTAFILLKIKHPNAPRPYKVPGGTAGAIVMCIPPTILICVVLAFSTLKVLVVSLIAMSIGLIMQPCLKFMEKKRWMKFSHSSELPDIVNGEHNNSLLG 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06048 473 Gene3D Amino acid/polyamine transporter I 24 458 - -
Vifa1g06048 473 FunFam Amino acid permease, putative 25 454 - -
Vifa1g06048 473 PIRSF AA_transporter 12 469 - -
Vifa1g06048 473 PANTHER POLYAMINE TRANSPORTER PUT1 17 465 IPR044566 GO:0022857
Vifa1g06048 473 Pfam Amino acid permease 39 419 IPR002293 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06048 Vifa-Chr1 945549241 945550662 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06048 1 472 Organic Solute Cotransporters AT1G31830 70.921 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06048 - - gmx:100816567 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06048 1 945549241 945550662 Vifa1g06048 1 945549241 945550662 ECH