Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05972 ATGAATCGCCACCACGATCCCAATCCATTCGAAGAAGAAGAAGTCAATCCGTTCTCGAATGGTGCTGGATCAAAATCACGTGTTCCACCGTCATCTGGACCACTAGGCTTTGGTCAAAGGCATGATGCTACGGTTGATATTCCTTTGGAAACTTCAAATGGGGACTCCAAGAAAAGAAGTCAAGAGCTAGCAGCTTGGGAAGCTGATTTAAAAAGGAAAGAGAAGGAAATAAAAAGAAGAGAAGATTCTGTCGCTAAAGCTGGTGTGCCCGTTGATGATAAGAATTGGCCTCCATTTTTCCCAATGATTCACCACGATATTGCCAATGAGATTCCAGTCCATGCACAGAGGCTGCAATATTCAGCCTTTGCTAGCTGGTTGGGAATCGTTCTCTGCTTAGTTTTTAATGTAGTTGCTGTGACTGTCTGTTGGATCAGAGGCGGGGGTGTTAAAATTTTTTTCCTTGCAGTGATTTATGCGCTGCTTGGGGTTCCCCTTTCATACGTGCTTTGGTACAGGCCCCTCTATCGTGCTATGAGGACGGATAGTGCTCTGAAGTTCAGTTGGTTTTTCATGGTCTACTTGCTTCATATAGCATTTTGCATCTTTGCTGCAATTGCACCTCCAGTTGTTTTTCATGGACAGTCGTTAACGGGCATCCTTGCGGCAATTGATGTGTTTTCAGACCACGTATTGGTTGGGATATTTTACTTGATTGGATTTGGACTGTTTTGCTTGGAGGCTCTTCTAAGCTTGTGGGTTATTCAGAAAATATACATGTTTTTCCGGGGGCACAAGTGA 801 0.4395 MNRHHDPNPFEEEEVNPFSNGAGSKSRVPPSSGPLGFGQRHDATVDIPLETSNGDSKKRSQELAAWEADLKRKEKEIKRREDSVAKAGVPVDDKNWPPFFPMIHHDIANEIPVHAQRLQYSAFASWLGIVLCLVFNVVAVTVCWIRGGGVKIFFLAVIYALLGVPLSYVLWYRPLYRAMRTDSALKFSWFFMVYLLHIAFCIFAAIAPPVVFHGQSLTGILAAIDVFSDHVLVGIFYLIGFGLFCLEALLSLWVIQKIYMFFRGHK 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05972 266 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 5 265 IPR007273 GO:0015031|GO:0016020
Vifa1g05972 266 Coils Coil 56 83 - -
Vifa1g05972 266 Pfam SCAMP family 94 264 IPR007273 GO:0015031|GO:0016020
Vifa1g05972 266 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05972 Vifa-Chr1 934161774 934168055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05972 1 266 Miscellaneous Gene Families AT1G32050 73.881 1.06e-150 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05972 K19995 - gmx:100806586 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05972 1 934161774 934168055 Vifa1g05972 1 934161774 934168055 ECH