Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05954 ATGGCTGCTCTGCAATACTTGGAATCCCTTCGAACTTCCCACCCTGAACTCGGCGAATGGTACAATTCTCTTGCGGATCTGTACCAGAACAAGCTATGGCATCAGCTTACTCTCAAGCTCGAACAGTTCGTCGCTCTTGCCGTTTTTCAGGCCGGCGATGCTCTGATACAGTTATACAACAATTTCATTACAGACTTTGAGACCAAGATCAACCTTCTCAAGCTTGCACATTTTGCTGTGATGGTTTCTCGACAGTATTCTGAGAAAGAAGCTGCTGTTGCTTATCTTGAAGGGGTCATTGAGAAACTGCAAGCAACTAGAGAGCAGCGGATTGAAGAGCCCATCCTATACATAAAGATGCAAATTGCCTTATTTAAACTTGAGCAAGGTGACCAAAAAGAATGCAAGAATCTTCTTGAAAATGGAAAGAGTACACTTGACAGCATGACAGATATTGATCCAACTGTGTATGCAAGCTATTATTGGGTATCTTCTCAATATCACAAGTCCCGCCAGGAATTTGCTGAGTTCTACAAAAATGCTCTTCTCTATTTGGCATACACATCAGTGGAGTCTCTCTCTGATTCATTCAAGCTGGATTTGGCATTTGACCTGTCCCTTTCTGCTCTGTTGGGGGATAACATATACAACTTTGGAGAACTACTTGCCCATCCTATTATTAAGAGCCTCCTAGGGACAAAGGTGGAATGGCTCTACTACATTCTGCAGGCATTCAATTCTGGTGATTTGGTTCGATATCAAGAATTATGTCAGGTGCATAATGCTGCTTTAAGGGCTCAACCGGCACTTGTTCAAAATGAACAGAAGCTGTTGGAAAAGATCAACATTCTCTGTCTGATGGAAATTATATTCAGCCGGCCTTCGGAAGACCGCACTATTCCCTTGAGTGCAATTGCAGAGCGTACAAAGCTTTCAATAGAGGATGTGGAGCATCTCCTTATGAAGAGCCTATCTGTTCATTTGATCGAGGGTATTATTGATCAAGTGGAGGGCACAGTACATGTTTCTTGGGTGCAACCAAGAGTTCTTGGTATTCAACAGATAAAATCCTTAAGGGATCGACTGGATAGTTGGACAGGAAAAGTACACACAGCGTTGTTGTCCATCGAGGCCGAGACACCTGATTTAATTGGATCATGA 1161 0.4298 MAALQYLESLRTSHPELGEWYNSLADLYQNKLWHQLTLKLEQFVALAVFQAGDALIQLYNNFITDFETKINLLKLAHFAVMVSRQYSEKEAAVAYLEGVIEKLQATREQRIEEPILYIKMQIALFKLEQGDQKECKNLLENGKSTLDSMTDIDPTVYASYYWVSSQYHKSRQEFAEFYKNALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCQVHNAALRAQPALVQNEQKLLEKINILCLMEIIFSRPSEDRTIPLSAIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDSWTGKVHTALLSIEAETPDLIGS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05954 386 SUPERFAMILY "Winged helix" DNA-binding domain 275 348 IPR036390 -
Vifa1g05954 386 Gene3D - 73 343 - -
Vifa1g05954 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 IPR000717 -
Vifa1g05954 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Vifa1g05954 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 4 384 IPR035298 -
Vifa1g05954 386 Pfam PCI domain 238 343 IPR000717 -
Vifa1g05954 386 FunFam 26S proteasome non-ATPase regulatory subunit 13 homolog B 174 373 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05954 K03039 - gmx:100804455 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05954 1 931891422 931895056 Vifa1g05954 1 931891422 931895056 ECH