Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05952 ATGGATCATAATAGAGAAGATGGTTGGAGGGAATTGGTGAAGAATATGCTTCCTCCTGGTGCTTCTGTTCCTGATGATGCTTCTAGTCTTGATTACTCAAGAGGTTTGGAATATTTAGGTCCGCCGGTTTCTTATGAAGTACCGATAGTTGAGCCACTAGGTGTGAAATCAAGAGCAATAGAACAGATCCCTCTGCCGATGTCTCGTATTGTCGGTGTAACGGGATCTCCTAATCATAGTCCGAGGGTGTCGGGAAGTTCAGAATCCGTGGTTTCTGTGTTACTAAACCCTGATCTTTCTTCCGGTTCGCCTTCTGCATCACCTGCTTCGGTTCATAATCCTTCAAATGTTGTTACTAAGACGGCGATTAACGAAGCAAAGAGGGCGCCTGTTGTTACTTTTAATACTGTTGAAAGGTCTCAAATGAAAGAGGTGGTGGAGGTTGTGAAGCCGGTGTATCCGGAATACGTTGGAGTTGTAAAAGAAAAGAACAAAAAGAAAATTAGAGTTTGTTATAGGTGCGGAAAAGGGAAGTGGGAAACTAAAGAGTCTTGCTTAGTTTGTAATGCAAAGTATTGCAGCAACTGTGTGCTTAGAGCAATGGGATCAATGCCCGAGGGGCGAAAATGTGTAACGTGCATTGGTCAGCCTATAGACGAATTGAAACGACTGAAATTAGGTAAATATTCGAGGGTGTTGTCCCGGCTGTTGAGTCCTCTCGAAGTCAAGCAAATTATGAAAGCGGAGAAAGAATGCTCTGCGAATCAGCTTCAGCCGGAGCAGTTGAGTATCAACGGATTGCCCTTGAAGCCTGACGAGATGGCGGAATTACTTGGATGTCCCTTACCTCCGCGTAAGCTGAAGCCTGGTAGATACTGGTACGACAAAGAATCCGGTCTATGGGGAAAGGAAGGGGAAAAACCTGACAGAATCATTAGTTCAAACTTGAATTTCTCTGGCAAACTAAGCACTAATGCTAGTAACGGAAACACTGAGGTTTACATCAATGGTCGAGAGATCACAAAACTTGAATTGAGGGTACTCAGGTTGGCAAATGTGCAGTGTCCACGTGATACTCATTTTTGGGTTTATGACGATGGTCGTTACGAGGAGGAAGGTCAAAAGAATATAAGAGGAAACATTTGGGAGAAGGCATCAACAAGATTTGTCTGTGCCTTGTTCTCTCTACCCTTTCCACATGGACAGCATCATGGTTCAAGAGACGAGACTAGTAATTTTACCGTAGTTCCTAAATATCTGGAACAGAAAAAAACTCAGAAGCTTCTTCTGCTTGGAATTCAAGGATCTGGAACTAGCACTATGTTTAAGCAGGCCAAATTTTTATATGGGAACGCGTTTACTGAACAAGAGCTAGAGGATGTTAAACTGATGATACAGAGTAACATGTACAAATATCTTAGCATTTTACTTGATGGAAGAGAGCGTTTTGAAGAGGAGGTTGTTTCTAGATTGAATGGACAAGGTTCTCCTCGTCAAATCATGGAACCCGGTAGCAATGGTGAAGCTAGCACTACTAGTGAATGCATCTATTCTCTCAACCCAAGGTTAAAACATTTTTCCGACTGGCTCCTGGACATTATAGCCACCGGGGATTTGGATGCATTCTTCCCCGCAGCAACACGTGAATATGCACCATTAGTTGAAGAAGTGTGGAAAGATCCTGCAATACAAGAAACCTTCAAAAGAAAAGACGAGCTTCACTTCCTTCCAGATGTTGCGGAGTACTTCTTAAGCCGGGCTGTCGAGATATCTAGCAATGAGTATGAACCTTCTGAAAGGGACATACTATATGCAGAAGGGGTTACTCAAGGAAATGGTTTGGCTTTTATGGAATTCTCACTCGATGATCGTAGCCCAAAGTACGAAGCTTATACAGATAACCCGGATGGTCAAATGCAACCTCAGACCAAGTATCAACTCATCAGGGTGAACGCCAAAGACAGCAGCGGCAACGGAACACTTCTCCAAAACAAGTTGATACAAAGCAAGGAGCTTTTTGAAACAATGGTGAGACACCCTTGTTTCAAAGACACCCCATTAATACTAGTTCTTAACAAATACGATGTCTTCGAGGAAAAAATGAAAAGGGTGTCCCTAAATGCCTGCGAATGGTTCATTGATTTTTGTCCCGTGCGCGCAAACGACAGTAACCAATCACTCGCCCACCAAGCTTACTTCTACGTTGCCATGAAATTCAAAGACCTTTACGCGTCCATCTCAGGAAGAAAACTCTTTGTCGCCCAAGTAAGGGCGAGAGATAGAATAACGGTTGATGAAGCATTCAAGTACATAAAAGAGGTTCTCAAATGGGATGAAGAGAAAGATGAAAATTACTACGGTCCACCTGAGGATTCAATTACAGACATGAGTTCTTCTTTTTATGTTGGACAGGAGTAA 2418 0.4297 MDHNREDGWRELVKNMLPPGASVPDDASSLDYSRGLEYLGPPVSYEVPIVEPLGVKSRAIEQIPLPMSRIVGVTGSPNHSPRVSGSSESVVSVLLNPDLSSGSPSASPASVHNPSNVVTKTAINEAKRAPVVTFNTVERSQMKEVVEVVKPVYPEYVGVVKEKNKKKIRVCYRCGKGKWETKESCLVCNAKYCSNCVLRAMGSMPEGRKCVTCIGQPIDELKRLKLGKYSRVLSRLLSPLEVKQIMKAEKECSANQLQPEQLSINGLPLKPDEMAELLGCPLPPRKLKPGRYWYDKESGLWGKEGEKPDRIISSNLNFSGKLSTNASNGNTEVYINGREITKLELRVLRLANVQCPRDTHFWVYDDGRYEEEGQKNIRGNIWEKASTRFVCALFSLPFPHGQHHGSRDETSNFTVVPKYLEQKKTQKLLLLGIQGSGTSTMFKQAKFLYGNAFTEQELEDVKLMIQSNMYKYLSILLDGRERFEEEVVSRLNGQGSPRQIMEPGSNGEASTTSECIYSLNPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEEVWKDPAIQETFKRKDELHFLPDVAEYFLSRAVEISSNEYEPSERDILYAEGVTQGNGLAFMEFSLDDRSPKYEAYTDNPDGQMQPQTKYQLIRVNAKDSSGNGTLLQNKLIQSKELFETMVRHPCFKDTPLILVLNKYDVFEEKMKRVSLNACEWFIDFCPVRANDSNQSLAHQAYFYVAMKFKDLYASISGRKLFVAQVRARDRITVDEAFKYIKEVLKWDEEKDENYYGPPEDSITDMSSSFYVGQE 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05952 805 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 663 778 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa1g05952 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 777 IPR027417 -
Vifa1g05952 805 FunFam Extra-large guanine nucleotide-binding protein 3 454 606 - -
Vifa1g05952 805 Pfam G-protein alpha subunit 422 627 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa1g05952 805 Pfam G-protein alpha subunit 663 774 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa1g05952 805 SUPERFAMILY Transducin (alpha subunit), insertion domain 453 605 IPR011025 GO:0007165
Vifa1g05952 805 ProSiteProfiles G-alpha domain profile. 424 786 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa1g05952 805 MobiDBLite consensus disorder prediction 782 805 - -
Vifa1g05952 805 MobiDBLite consensus disorder prediction 791 805 - -
Vifa1g05952 805 Gene3D - 454 606 IPR011025 GO:0007165
Vifa1g05952 805 PRINTS Alpha G protein (transducin) signature 595 617 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa1g05952 805 PRINTS Alpha G protein (transducin) signature 427 442 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa1g05952 805 PRINTS Alpha G protein (transducin) signature 687 696 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa1g05952 805 SUPERFAMILY FYVE/PHD zinc finger 158 214 IPR011011 -
Vifa1g05952 805 SMART galpha_1 407 772 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vifa1g05952 805 Gene3D - 639 784 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05952 Vifa-Chr1 931879820 931884776 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05952 - - cam:101505955 1401.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05952 1 931879820 931884776 Vifa1g05952 1 931879820 931884776 ECH