Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05942 ATGGATAGTTCAGAGAAGGTTGTTGCTGTGATTATGGTGGGTGGACCCACAAAAGGGACTAGATTTCGACCTCTTTCTTTCAATACTCCAAAACCCCTTTTCCCTTTGGCTGGACAACCTATGGTTCATCATCCTATTTCTGCTTGTAAAAGGATACCCAATTTAGCTCAAATATATCTTATTGGATTCCATGAGGAGCGAGAATTCGCTCTATACGTCTCTTCTATTTCAAACGAGCTGAAATTGCCAGTAAGATATTTGAAGGAGGATAAACCACATGGCTCAGCAGGTGGCCTTTACTACTTCAGAGATATAATCATGGAAGACAGTCCATCACATATCTTTCTGCTAAATTGTGATGTTTGCTGCAGTTTTCCACTACCGTCCATGCTTGATGCTCATATAAAGTATGGTGGGATGGGGACAATGTTAGTAATCAAGGTTTCAGCTGAATCTGCTAACCAGTTCGGTGAATTGGTTGCTGATCCAGACACTCATGAATTGCTGCATTATACTGAGAAACCCGAGACATTTGTTAGTGATTTGATAAATTGTGGTGTATACATTTTCACACCTGATATTTTTAATGCCATCGAGGATGTATCTACGAACCGAGAAGGAAGAGCTAATCTACGACGTCTTTCCAGTTTTGAAGCTCTCCAATCTGCGACCAGGATTCTTCCTAAAGATTTCGTAAGACTGGATCAAGATATACTTTCACCTTTAGCTGGAAAGAAGAAGTTGTATACATACGAGACAAATGATTTCTGGGAGCAAATTAAAACTCCGGGCCTGTCTTTGAAATGCTCGGAGTTGTATCTTGCTCAATTTCGATATACTTCCTCGCATCTTTTGGCCAGCGGAGATGGTGAAAAGAATGCTAAAATTGTTGGTGATGTATATATTCATCCGTCTGCGAAAGTTCATCCATCTGCAAAGATTGGTCCGAATGTTTCTATCTCAGCAAATGTTCGTGTTGGTGCTGGCGTCAGGTTAATCGGTTGTATAATATTGGACGATGTTGAAATTAAGGAAAATGCTGTAGTTATAAATTCCATTGTTGGATGGAAGTCTTCGCTTGGAAGATGGTCACGTGTACAGGCATGTTTGGCTGATGGTGATTACAATGCAAAGCTTGGCATAACCATCCTAGGTGAAGCTGTGACAGTTGAAGATGAAGTAGTGGTGATCAACAGCATTGTTCTTCCTCACAAGATTCTTAATGTCAGTGTACAAGATGAAATCATCTTATAA 1254 0.4027 MDSSEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMVHHPISACKRIPNLAQIYLIGFHEEREFALYVSSISNELKLPVRYLKEDKPHGSAGGLYYFRDIIMEDSPSHIFLLNCDVCCSFPLPSMLDAHIKYGGMGTMLVIKVSAESANQFGELVADPDTHELLHYTEKPETFVSDLINCGVYIFTPDIFNAIEDVSTNREGRANLRRLSSFEALQSATRILPKDFVRLDQDILSPLAGKKKLYTYETNDFWEQIKTPGLSLKCSELYLAQFRYTSSHLLASGDGEKNAKIVGDVYIHPSAKVHPSAKIGPNVSISANVRVGAGVRLIGCIILDDVEIKENAVVINSIVGWKSSLGRWSRVQACLADGDYNAKLGITILGEAVTVEDEVVVINSIVLPHKILNVSVQDEIIL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05942 417 FunFam Putative GDP-mannose pyrophosphorylase 283 414 - -
Vifa1g05942 417 Gene3D Hexapeptide repeat proteins 282 416 - -
Vifa1g05942 417 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 8 276 IPR029044 -
Vifa1g05942 417 Pfam Nucleotidyl transferase 9 206 IPR005835 GO:0009058
Vifa1g05942 417 FunFam Mannose-1-phosphate guanyltransferase alpha 6 277 - -
Vifa1g05942 417 SUPERFAMILY Nucleotide-diphospho-sugar transferases 7 356 IPR029044 -
Vifa1g05942 417 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 8 417 - -
Vifa1g05942 417 CDD M1P_guanylylT_A_like_N 9 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05942 Vifa-Chr1 931103430 931106511 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05942 K00966 - fve:101314646 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05942 1 931103430 931106511 Vifa1g05942 1 931103430 931106511 ECH