Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05922 ATGAGCAATAATATGGATCAAGAATCTGAGAATGGGAGTGTTGCTCAAACACCTAATGCTATGGATATTTCTCTCTCGAGATCAACTTCTAAGAGAGTGGAGGATCAGTATGCGTCGAGTTCTATGTTTACCGGAGGTTTTAATCAGGTTACGCGATCCCAATTCAAGGATAAGGTGATTGAATCTGATTCCAGCCATCATCCTCAGATGGCTGGGACTACAGGGTCAGCTTGTGAGATGCTGGGGTGTGACGGAAAGGTCATGATCGACGAGAGAGGTTTGGAGATACTTCCTTGTTACTGTGATTTCAAAATTTGTAGGGATTGTTATAAGGATACTTTAAGAAACGGTGAACTGATTTGTCCGGGATGCAAGGTTGCTTATGCGGAGCATGAGATGGCAGATGCGGGTTCTGCGGTCAATCAGAAGTCATTACCTTGGCCAACTGGTGGCCGTGATGTGTCGAAGAGGTTGTCGAGGATGAAATCGGGGAATTCGACGAGTAGCACAACTAATGAACTTGATCATGATCCATGGTTGTCTGAGACTAAAGGGAGCTATGGATATGGAAATGTTATGTGGCCTAAAGATTCTGAGAATGGTGCTAGTTCTAGGTCTGGTTCTGATTTGATGGGCGGTGACCCTGATGGTTTCAAAGAAAAGGAATGGCGGCCTTTGACACGGAAATTGAATATTTCAACTACAATTCTGGGTCCTTATCGGTGCATAATATTTGCTCGGATGGTGATTTTAGTTCTCTTCCTCAGGTGGAGGGTAATAAACCCGAACGAAGATGCAATCTGGCTGTGGGGAATGTCTTTAGTATGTGAAATCTGGTTTGCCATCTCTTGGCTTCTTGACCAGTTCCCTAAGCTCTTTCCGTTAAACAGGGTTGCTGATCTCGATGTTTTGAAAGAGAAGTTCGAAACTCCTAGTCCACACAATCCAACAGGAAAATCCGATCTTCCAGGAGTTGATATATTTGTGTCAACGGCGGATCCCGAAAAAGAACCGCCGCTTGTTACTGCAAATACTATTCTTTCTATTCTAGCCGCGGATTATCCCGTGGAGAAACTTTCATGTTATGTCTCTGATGACGGGGGTTCGCTTCTTACTTTTGAGGCCATGGCAGAGGCAACAAGTTTTGCTAATTTGTGGGTTCCTTTTTGTCGGAAGCACGACATTGAGCCAAGGAACCCGGAATCTTATTTTAGTCTCAAGAGAGATCCATATAAGAACAAAATACGTTCTGACTTTGTAAGAGACCGTAGGAGGGTGAAGCGTGAGTATGATGAATTCAAGGTTCGGATTAATGGCCTTCCAGATTCAATCCGGAGGCGCTCTGATGCTTTTAATGCTGGAGAGGATGTTAAAGCACTGAGGTTGTGGAAAGAGGCTGCGAATGATGAACCAATAGAGAATTTGAAAATTACTAGAACTACACGGATGACTGATGGTACTGACTGGCCAGGGACATGGACAACTCCTGCCCCGGATCATTCTCGGGGTGATCATTCCAGTATCATACAGATAATGTCGAAACCTCCAAGTAACGAACCACTGATTGGCACAGCATCAGATTCAAATACAATGGATTTGACCGAAGTTGATATCCGCCTTCCTATGCTTGTCTATGTTTCTCGTGAAAAACGACCGGGCTATGATCACAACAAGAAAGCTGGGGCCATGAATGCTCTTGTTCGAGCTTCAGCTGTTATGTCCAATGGCGCTTTCATACTTAATCTTGACTGTGACCATTACATATATAACTCGGAGGCATTGAGGGAAGGCATGTGCCATATGATGGACCGCGACGGAGAAAGGATCTGCTACGTTCAGTTTCCCCAAAGGTTCGAAGGAATCGACCCTTCTGATCGCTATGCTAACCACAATACTGTCTTCTTTGATGTCAATATGCGAGCTCTCGATGGACTTCAGGGTCCTTTTTACGTTGGTACAGGATGCCTATTTCGAAGAACTGCACTTTATGGTTTTGATCCGCCTCGGTTGCAAGAAGAGGCTGCTGAGGGTGCTGGTTGGTTTGGTAGTAAGAAAAAGAAATCCGCAACAGTTGCCTCAGTCTCTGAAGTAGATTCTCTAGAGGACCAGTCTTTAAGGAGTGGTGGTAGCATTGATGATGAAGAAATGAATATTGCTCTTATTCCGAAGAAATTCGGCAACTCGAGTCTTTTTGTTGAATCAATCAGGGTGGCAGAGTTTCAAGGGAGACCACTTGCCGATCACCCATCTGTGAAAAATGGACGCCAACCCGGTGCTCTAATACTTCCTCGGGATCTTCTCAATGCTGCAACTGTCTCCGAGGCAATCGATGTCATCTCGTGCTGGTACGAAGATAAAACCGAATGGGGAGATAGAGTTGGATGGATTTACGGTTCTGTAACTGAGGACGTCGTGACAGGTTATAGAATGCATAATAGAGGATGGAGATCTGTGTATTGTGTGACCAAGAGGGATGCTTTCCGGGGATCTGCTCCAATCAATCTCACTGACCGGCTTCACCAAGTTCTTCGATGGGCAACTGGATCAGTTGAAATATTCTTTTCGCGCAACAACGGTCTCTTGGCTAATTCAAAACTACAATTTTTGCAAAGGGTCGCTTACCTCAACGTCGCAATCTATCCATTCACTTCTTTCTTCCTTATAGTTTACTGCTTCCTCCCAGCTCTATCGCTTTTCACCGGCCAGTTCATCGTCCAGTCCCTTCAAGTCGAATTCTTAGTTTACCTTATGGGAATCATGGTCACACTTATAGTTCTCGCTGTTCTCGAAATCAAATGGTCCGGTATCGAACTCGTTGACTGGTGGAGAAACGAGCAATTCTGGATGATCGGAGGCACAAGTGCGCATCTAGTCGCGGTTCTTCAAGGTCTACTCAAGGTAATAGCTGGTATTGAGATCTCATTCACTCTAACATCAAAGTCATCCGGTGACGACGAAGACGACTACGCGGATCTCCATGTCATCAAATGGTCATCTTTGATGATACCGCCGCTCACAATCATAATGGTTAATATAATAGCAGTCGCGGTTGCGGTTAGTAAAACGATATACAGCGAAGATCGAAAATGGAGTAGTTTACTTGGAGGTATATTCTTCAGCTTTTGGCTCTATTATCAATATGTATATCACTTTTATGGGTTGCTATTAATCCTCCTTCTGGTAACAATCAAATATGAGGTTCATTCCAATTTCCTTAACTTGTAA 3225 0.4434 MSNNMDQESENGSVAQTPNAMDISLSRSTSKRVEDQYASSSMFTGGFNQVTRSQFKDKVIESDSSHHPQMAGTTGSACEMLGCDGKVMIDERGLEILPCYCDFKICRDCYKDTLRNGELICPGCKVAYAEHEMADAGSAVNQKSLPWPTGGRDVSKRLSRMKSGNSTSSTTNELDHDPWLSETKGSYGYGNVMWPKDSENGASSRSGSDLMGGDPDGFKEKEWRPLTRKLNISTTILGPYRCIIFARMVILVLFLRWRVINPNEDAIWLWGMSLVCEIWFAISWLLDQFPKLFPLNRVADLDVLKEKFETPSPHNPTGKSDLPGVDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGSLLTFEAMAEATSFANLWVPFCRKHDIEPRNPESYFSLKRDPYKNKIRSDFVRDRRRVKREYDEFKVRINGLPDSIRRRSDAFNAGEDVKALRLWKEAANDEPIENLKITRTTRMTDGTDWPGTWTTPAPDHSRGDHSSIIQIMSKPPSNEPLIGTASDSNTMDLTEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAVMSNGAFILNLDCDHYIYNSEALREGMCHMMDRDGERICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPFYVGTGCLFRRTALYGFDPPRLQEEAAEGAGWFGSKKKKSATVASVSEVDSLEDQSLRSGGSIDDEEMNIALIPKKFGNSSLFVESIRVAEFQGRPLADHPSVKNGRQPGALILPRDLLNAATVSEAIDVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGSAPINLTDRLHQVLRWATGSVEIFFSRNNGLLANSKLQFLQRVAYLNVAIYPFTSFFLIVYCFLPALSLFTGQFIVQSLQVEFLVYLMGIMVTLIVLAVLEIKWSGIELVDWWRNEQFWMIGGTSAHLVAVLQGLLKVIAGIEISFTLTSKSSGDDEDDYADLHVIKWSSLMIPPLTIIMVNIIAVAVAVSKTIYSEDRKWSSLLGGIFFSFWLYYQYVYHFYGLLLILLLVTIKYEVHSNFLNL 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05922 1074 MobiDBLite consensus disorder prediction 141 179 - -
Vifa1g05922 1074 SUPERFAMILY Nucleotide-diphospho-sugar transferases 340 667 IPR029044 -
Vifa1g05922 1074 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 519 677 IPR029044 -
Vifa1g05922 1074 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 142 IPR013083 -
Vifa1g05922 1074 SUPERFAMILY RING/U-box 64 133 - -
Vifa1g05922 1074 FunFam cellulose synthase-like protein D3 530 667 - -
Vifa1g05922 1074 MobiDBLite consensus disorder prediction 486 505 - -
Vifa1g05922 1074 MobiDBLite consensus disorder prediction 160 176 - -
Vifa1g05922 1074 Pfam RING/Ubox like zinc-binding domain 82 128 - -
Vifa1g05922 1074 Pfam Cellulose synthase 325 1051 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vifa1g05922 1074 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 224 1055 - -
Vifa1g05922 1074 MobiDBLite consensus disorder prediction 1 28 - -
Vifa1g05922 1074 MobiDBLite consensus disorder prediction 199 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05922 Vifa-Chr1 928993166 928996742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05922 6 1055 Glycosyltransferase AT3G03050 67.921 0.0 1507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05922 K20924 - gmx:100813900 1640.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05922 1 928993166 928996742 Vifa1g05922 1 928993166 928996742 ECH