Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05857 ATGGCGGTGAAATGCTTACTCCGCAGCAGAGTTCACTTCCAACAACCACGTTTCTTCAGATTCTATTCCCCAAATTCTTCCGCACTGATGTTGGAGGATGAAACTCCAAATTTCAATGCCCCAGTTCCTAAAACCCCGCCGAAATTATCTCGTTTGGTTGTTAAAGTGTTCAAGTCCTTAAATTGGGGGGTTGCAAGGGAAGTAAAGTTCAAAGGTTTGGTTCAAAGTCATGGTTTTTATCATTCTATCAATTCCTTTAGAATCATCATTCACACTTATGCTTTGGCTGGTATGAGTTTGGAAGTGTTTATTTTGCTTAGAGATATTGTTGAATACTATAAAGAGCAAAATCGAGACGCGTTCGAGTTGTTTTCGGTTTTGCTTGATTCACCACACCATGTGAAAAGTTCTGTTGTTGTGTCTGATGCGCTTATGAAAGTTTTTGCTTCAAACTCTATGCTTGAACATGCCTGTTATGTGTTTGTTAATGCTAGGGATGTTGGGATTGAGCCGAATATAATGTCGTGTAATTTCTTGTTGAAGTGTTTGGTAGAAGCAAATAGAGTGGATGGTGTGAGATGGTTCTTTGAGGATTTGAAAAAGTTTGGTCCGAAGATGAATATCCATACTTATACAATCATGATGAACTTTTATTGTAGAGATGTTGGGTGCAGTGCTGATATTAGGCGGGCTTCTGAGATTTTAGGAAAGATATATAGGAGTGGGGAAACCCCGACTGTTGTTACGTATAGTACTTATATTAAGGGACTTTGTAAAGTTGGTTGCGTTGAGGTTGCGTTGAAGTTAATTTGTGACTTGCACCGAAAAAACCTGCCTTTCAATAGCCATTGTCTTAATGCTGTAATATATGGATTTTGTCAAAGAGGTGCAATAGATGAAGCTTCAATAGTTTTGGAAGAAATGAAAAACTCTGTAATACTGCCCGATGTTTATAGTTATAGCATTTTAGTTGATGCATTTTGTAAGAATGGATATGATAAGAGAGCTATTGACTTGATGACAGATATGAAGCTCTACGGAATAAAACCATCCATTGTTAGCTATACTTCTCTCATTCGCAGTTTATTCAAGAATAGGCCGATGCAAAGCTTGATGAATATCTTTCAAGAAATCGGTGCTTCAGGTTGCAAATATGATCAGATTATGTATGAAACTTTAGTTGATGGATTTTGCAGGAAAGGTGATATGGATTCAGCCATCCATCTTCTGGAGGAGATGAGTGGCAATAATTTTGCTCCCTCTGCTTTTAGTTATTGCAGTCTAATTAGGGGGTTCTACAAATTGAGACAATTCACTAACGCATTGAAAATTTATGGTATCATGCAAAAAAGGGGTTTCTGGCCAGATACAATCACTTGCAATCATATTCTTAGTATTCACTGCAGGAAACATGAATTCAATGTAGCCTTGGCATTGTCACAGAAATTCCAAGAACACGGAGTTAACCTCAACCCATATTCATATAATGAATTCATCCACAAGCTTTGTAGAGAAAGTTTTCCAGAAAAGGCACTGCAGCTTCTGCCGCTAATGCTTAAAAGGAATGTACTTCCTGAAGTTGTTAATTATAGTACGCTTATAACTGGCTTTGTCAAACATTCAAATTCTAAAAAGGCCGTGATGTTATTCACAAGGATGACAAAAGTAGGAATCACTTTCAACGTCAGAACGTATACATTTCTTATGGACCAATGTATCCGTAATTGCAAAAGGCGTTTAGCATACTACTTATTTGAGGAAATGAAAGAAAGGGGTGTATATCCAGATCAGAAAGCATATAATACTCTAATAGTTGCCTTTTGTAATGCTGAAGAAATGATTATGGCGCAGGCCTTATATTATGAAATGTTGCGGGAGGGCTGTTCACCAGATGTAGCTCTGTCAAGGCTTCCATTATATCCAGTTGGAAGGTCAAATATTTTGAATTCGGGTAAGTGCAATGATCCAAGGAAGACAAATTGGATTGGGTTCGTAAAGAGAGTCAAACATGATTTTTCAAGACCTTGCGCCTTCGCTCGCTGTGAGGTTGGATCTTTTTCGCGTCTGCTGAGAAGGATCGGGAAATGGGTTAAGCTTTGGGATGCTACCAACTGGTGGATACAACTCAATGTTAAATGCGAGACGAAAACAAAGGATAATGTCTTTGTGAACGTGGTTGCATCTGTACAATACCGCACTGTGGCTGACAAAGCGTCCGATGCCTTTTATAAGCTCACCAACAAAAGGGAACAAATCCAATCATATGTTTTTGATGTTATAAGAGCCAGTGTGCCAAAGTTGGAGCCGGATACGTCTTTGAGCAGAAGAATGATAGCAAAGGCTGTTGAAGATGAGCTTGAGAAGGCGATGTCGACCTACGCATACGACATAGTCCAGACTCTCATTGTTGATATAGAGCCTGATGTTAACGTCAAGAGAGCAATGAATGAGATCAATGCAGCTGCGAGAATGAGGACTCGGCTGCACACGAGAAAGCCGAAGCAGAAAAGATATTGCAGATCAAGAAAGCTGAGTCCAAGTATCTATTGGAACTCAGTATTAGGGATGTAG 2571 0.3917 MAVKCLLRSRVHFQQPRFFRFYSPNSSALMLEDETPNFNAPVPKTPPKLSRLVVKVFKSLNWGVAREVKFKGLVQSHGFYHSINSFRIIIHTYALAGMSLEVFILLRDIVEYYKEQNRDAFELFSVLLDSPHHVKSSVVVSDALMKVFASNSMLEHACYVFVNARDVGIEPNIMSCNFLLKCLVEANRVDGVRWFFEDLKKFGPKMNIHTYTIMMNFYCRDVGCSADIRRASEILGKIYRSGETPTVVTYSTYIKGLCKVGCVEVALKLICDLHRKNLPFNSHCLNAVIYGFCQRGAIDEASIVLEEMKNSVILPDVYSYSILVDAFCKNGYDKRAIDLMTDMKLYGIKPSIVSYTSLIRSLFKNRPMQSLMNIFQEIGASGCKYDQIMYETLVDGFCRKGDMDSAIHLLEEMSGNNFAPSAFSYCSLIRGFYKLRQFTNALKIYGIMQKRGFWPDTITCNHILSIHCRKHEFNVALALSQKFQEHGVNLNPYSYNEFIHKLCRESFPEKALQLLPLMLKRNVLPEVVNYSTLITGFVKHSNSKKAVMLFTRMTKVGITFNVRTYTFLMDQCIRNCKRRLAYYLFEEMKERGVYPDQKAYNTLIVAFCNAEEMIMAQALYYEMLREGCSPDVALSRLPLYPVGRSNILNSGKCNDPRKTNWIGFVKRVKHDFSRPCAFARCEVGSFSRLLRRIGKWVKLWDATNWWIQLNVKCETKTKDNVFVNVVASVQYRTVADKASDAFYKLTNKREQIQSYVFDVIRASVPKLEPDTSLSRRMIAKAVEDELEKAMSTYAYDIVQTLIVDIEPDVNVKRAMNEINAAARMRTRLHTRKPKQKRYCRSRKLSPSIYWNSVLGM 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05857 856 NCBIfam pentatricopeptide repeat 599 632 IPR002885 -
Vifa1g05857 856 NCBIfam pentatricopeptide repeat 564 596 IPR002885 -
Vifa1g05857 856 NCBIfam pentatricopeptide repeat 389 421 IPR002885 -
Vifa1g05857 856 NCBIfam pentatricopeptide repeat 248 280 IPR002885 -
Vifa1g05857 856 NCBIfam pentatricopeptide repeat 318 351 IPR002885 -
Vifa1g05857 856 NCBIfam pentatricopeptide repeat 530 561 IPR002885 -
Vifa1g05857 856 NCBIfam pentatricopeptide repeat 423 456 IPR002885 -
Vifa1g05857 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
Vifa1g05857 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Vifa1g05857 856 Pfam PPR repeat 423 453 IPR002885 -
Vifa1g05857 856 Pfam PPR repeat 529 558 IPR002885 -
Vifa1g05857 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Vifa1g05857 856 Pfam PPR repeat family 281 329 IPR002885 -
Vifa1g05857 856 Pfam PPR repeat family 561 609 IPR002885 -
Vifa1g05857 856 Pfam PPR repeat family 171 220 IPR002885 -
Vifa1g05857 856 Pfam PPR repeat family 455 504 IPR002885 -
Vifa1g05857 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Vifa1g05857 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
Vifa1g05857 856 SMART PHB_4 676 819 IPR001107 -
Vifa1g05857 856 Gene3D Tetratricopeptide repeat domain 223 344 IPR011990 GO:0005515
Vifa1g05857 856 Pfam SPFH domain / Band 7 family 710 825 IPR001107 -
Vifa1g05857 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Vifa1g05857 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Vifa1g05857 856 SUPERFAMILY Band 7/SPFH domain 707 825 IPR036013 -
Vifa1g05857 856 Pfam PPR repeat 243 269 IPR002885 -
Vifa1g05857 856 Pfam PPR repeat 382 414 IPR002885 -
Vifa1g05857 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Vifa1g05857 856 PANTHER ATPASE EXPRESSION PROTEIN 3 39 504 - -
Vifa1g05857 856 Gene3D Band 7 domain 699 821 IPR036013 -
Vifa1g05857 856 Gene3D Tetratricopeptide repeat domain 68 222 IPR011990 GO:0005515
Vifa1g05857 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Vifa1g05857 856 Gene3D Tetratricopeptide repeat domain 484 558 IPR011990 GO:0005515
Vifa1g05857 856 Gene3D Tetratricopeptide repeat domain 345 413 IPR011990 GO:0005515
Vifa1g05857 856 Gene3D Tetratricopeptide repeat domain 414 483 IPR011990 GO:0005515
Vifa1g05857 856 Gene3D Tetratricopeptide repeat domain 559 638 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05857 Vifa-Chr1 917945524 917953362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05857 441 634 Glycosyltransferase AT1G05670 24.615 5.81e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05857 - - cam:101492947 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05857 1 917945524 917953362 Vifa1g05857 1 917945524 917953362 ECH