Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05856 ATGGAGTTCTTCATAAAGGCAAAAGTAGTGCGCTTACGGAGCCACCATGATAAATATATGGTGGCGCATGAAGATCAAGAAAATGTTTATCAAGACCGAAACGGTTGTTATGACAATGCAAAATGGACAGTTGAGCTATTGGAGAGCAACAACAATAATGTGATAAGATTAAAGAGTTGTTATGGAAAATACCTAACAGCTTCAAACATGCCATTTCTTTTGAAAAGCACAGGTAAACAAGTGTTACAAACTTTACCTAAAAGATTAGGTTCATCGGTTGAATGGGAACCTTTTAGGGACGGTGTTCAAGTGAAACTAAGGACACGTTATGGACAATATCTTCGGGGAAATGGAGGATTGCCGCCTTGGAGAAACACAATAACACATGATATTCCACGTAGAACCGCAACAGTAAATTGGATTTTGTGGGATGTCGATATTGTGGAACTTAGACCAAAAGAAGTGGGACAAGTTCCTAAGCCAAGGCCGAGGCCTACACCTATTATACCACCAAATCGATGTTTGAATAATCCAATTACAACAATGAATAATTCATTTCCTTCTCCGTCTCTTTCACCACTTACAGATTCAGATAACGGACCCCTCGTCAAGATTGATCTAAGATCTCCTCGATCACCTGAGGGTCAATCTGAAATTTTCGAAGATTCATCTCCATCGCCAATGAAAGAAGGGAGGGTTATATTCTACGACATTGGTAATGAAAATGGTGAACTTATTGATGCAGATAAAGTAGCATTCTTCACATTTAAAGGAAGTTCTTTGATCGAGTTGAAGGAGAAATTGATGGAAGAAACTCAACTCAATGATATTCTTGTGTGTTGTCGCAATCCTTTGAATGCAAAACTTTACCCCATTCTTTTACATTTACCTCCAAACAATACTGATATGCATGTTGTTGTCGTTCCCTCTTCATTTAAAGGCAGCCAATTCATGCATAGAGCTCACAAGTCTGCACATTTCTAA 984 0.3862 MEFFIKAKVVRLRSHHDKYMVAHEDQENVYQDRNGCYDNAKWTVELLESNNNNVIRLKSCYGKYLTASNMPFLLKSTGKQVLQTLPKRLGSSVEWEPFRDGVQVKLRTRYGQYLRGNGGLPPWRNTITHDIPRRTATVNWILWDVDIVELRPKEVGQVPKPRPRPTPIIPPNRCLNNPITTMNNSFPSPSLSPLTDSDNGPLVKIDLRSPRSPEGQSEIFEDSSPSPMKEGRVIFYDIGNENGELIDADKVAFFTFKGSSLIELKEKLMEETQLNDILVCCRNPLNAKLYPILLHLPPNNTDMHVVVVPSSFKGSQFMHRAHKSAHF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05856 327 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 1 311 - -
Vifa1g05856 327 FunFam BnaC05g19630D protein 5 146 - -
Vifa1g05856 327 Gene3D - 9 127 - -
Vifa1g05856 327 MobiDBLite consensus disorder prediction 173 197 - -
Vifa1g05856 327 Pfam Domain of unknown function (DUF569) 1 143 IPR007679 -
Vifa1g05856 327 MobiDBLite consensus disorder prediction 157 198 - -
Vifa1g05856 327 MobiDBLite consensus disorder prediction 207 226 - -
Vifa1g05856 327 SUPERFAMILY Actin-crosslinking proteins 5 136 IPR008999 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05856 Vifa-Chr1 917882760 917884857 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05856 - - gmx:100775673 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05856 1 917882760 917884857 Vifa1g05856 1 917882760 917884857 ECH
Vifa1g05856 1 917882760 917884857 Vifa1g05856 1 917882760 917884857 PCT