Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05806 ATGTCTGGTCCAAATTCTCCTTCAAGGGCGAGTTCACTTTCGGAACCACTCGGCGTCGATCGAGTGAATCCTACGTTGACAGATCTTGACGGAGCTTCCGTTCAATCTCCTGTTCCGGTTAACTCTTCCGATGAACTGTCAGACATTCTTATGGCGGCACTTATCCAACCCGGGGAGGAGGATCTCAAACAGGCAGCCTCTTATGACATACTCAACCGCGATTCGGACTTTATTTTGCCGGAGGAGTTGGATCCTGACTGTCAACCTCTGAATTCAGCGCCGGCTGCTGATGAGCTGTCGGAACCATGGTTTTCCGAGGATGCTCTCGAAGATAGTTGGTCGTATGATGATGAACCGTCTAAGGGTGAGGTTTATGGTTCAGATTCTAAAGCTGCACTGTCGATGATTGGATCTGGGCTTGCTAACCTTGGGAACACTTGTTTTCTCAACTCGATTACGCAATGCTTCACTCATACAGTGCCTCTAGTTGAGGGTCTTCTTTCGTGCAGCCATTCTTCTGATGGTCATAATGGGTACTGTGTTATTTGTGCTTTCCGCTACCAGATGCAACGTTCCTTGCAGTCTACTGGAACTGTTATCTCCCCTGAGATACTTGTGGATAATTTGAGGCATTTTTCTTCTATGTTTAGAAGACATCAACAGGAGGATGCACATGAATTTATGCAGTGTGCATTGGATAAGCTTGATTCGTGTTTCTTAAGTTTGAAGAAGAATGATCCAAGTTTTGAGGGTGAGAATATTGTAAACAAAGTTTTTGGAGGAAGCCTGGTTAGCAAGCTCCGATGTTGTACCTGTGGCCGCTCTTCGGACACTAATGAGCCATTGATTGACTTGAGTTTAGAAATAGAAAATGTAGATTCTCTGTCGAGTGCTTTAGAATCTTTCACTATGTTGGAAAACATTGATGAAAAGCTTAAATGTGAGGGCTGCAATGAAGAAGTTTCTATGGAGAAGCAGCTTATGTTGAATCAGACACCTTCTATTGCTGCATTCCATTTAAAGAGGTTTAAGACAGATGGGGTTTTTGTTGAAAAGATCGACAAGCATATTGATTTCCCATTGGAGTTGGACTTGCAGCCTTACACCATTTCAAATGAAAACAATGTACCGTTGAAATATGATCTATATGCAGTTGTTGTGCATATTGGATTTTCATCTAACTCAGGGCATTATTTCTGCTTTGTTCGCACTGCTCCAGACACATGGCATAAGTTAGATGATTCAAAGGTTACTAAGGTATCAGAAAAGACTGTGCTGTCTCAAGAAGCATACATATTGTTTTATGCTCGACAGGGTACTCCTTGGTATTCAGAGTTTGCAGAATCTACAATTCCATCCCTGGATTTGAGCAGGATGAATACGTCGCCCAAGTCTGTTTTAGATATCCCTGATGGCCAGGATAAGTCATTTCCTATTTCAAAAGAAAATGTTGAGATGAGTGAGGCCATTGAATCCAAAAAAAATTCTGAAAAGAAGTTTGGTTATTCTAGTCGACAAAGTCGTGAGTTGCTTAAAATTGATGATGTTGTCGATGCTTCTCCTCACCGTGAACAATTACCTGCTGGGCCTTCAAATCAGAAAACTCTTAATGTGAAAGGATTGGAAGATATCAACTCCAAAGTGCTACCTTTGAATAATGCCAGCTTGAGTGGTACTGCAAAGGCTGGTGGGAGTTCATATGCTGATAACAGTGCTCATGACAAAAACAAATCTACTAGTGTTTTGGATTTCCTAGAGAATGATATTTTCAGTTCTATTACTCCTCCCAACACACCCCCTTCTCAGACTCCAGGTAAGAGTTTCCAGATCTCACGTGATCATGTGAAGACAGAGAATCAAGGGAGCAGTAAAAGATCATCATCAAATAAGTCAAATAAGTCATCTGGTAGTCCTGGAAAAAAAGCTGCTATCTCTTATCTTAAGAAGATGCCTGGTTCAAGGAGAGGTGCATTTTTGGACTTAGTTAATTCTTGTCATAACAAAACTTCCCCAGAGAACAAGAGAAAAAACACCGATTCATCGCTGTCTGTCAAAGGAAACAACAGTGCTCGCAAGAAATCAGCCCATGCTTCTGTTGGTGGCTACCCTGTGGCAGCCGGAATTTCACAATGA 2133 0.4201 MSGPNSPSRASSLSEPLGVDRVNPTLTDLDGASVQSPVPVNSSDELSDILMAALIQPGEEDLKQAASYDILNRDSDFILPEELDPDCQPLNSAPAADELSEPWFSEDALEDSWSYDDEPSKGEVYGSDSKAALSMIGSGLANLGNTCFLNSITQCFTHTVPLVEGLLSCSHSSDGHNGYCVICAFRYQMQRSLQSTGTVISPEILVDNLRHFSSMFRRHQQEDAHEFMQCALDKLDSCFLSLKKNDPSFEGENIVNKVFGGSLVSKLRCCTCGRSSDTNEPLIDLSLEIENVDSLSSALESFTMLENIDEKLKCEGCNEEVSMEKQLMLNQTPSIAAFHLKRFKTDGVFVEKIDKHIDFPLELDLQPYTISNENNVPLKYDLYAVVVHIGFSSNSGHYFCFVRTAPDTWHKLDDSKVTKVSEKTVLSQEAYILFYARQGTPWYSEFAESTIPSLDLSRMNTSPKSVLDIPDGQDKSFPISKENVEMSEAIESKKNSEKKFGYSSRQSRELLKIDDVVDASPHREQLPAGPSNQKTLNVKGLEDINSKVLPLNNASLSGTAKAGGSSYADNSAHDKNKSTSVLDFLENDIFSSITPPNTPPSQTPGKSFQISRDHVKTENQGSSKRSSSNKSNKSSGSPGKKAAISYLKKMPGSRRGAFLDLVNSCHNKTSPENKRKNTDSSLSVKGNNSARKKSAHASVGGYPVAAGISQ 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05806 710 MobiDBLite consensus disorder prediction 1 42 - -
Vifa1g05806 710 SUPERFAMILY Cysteine proteinases 137 437 IPR038765 -
Vifa1g05806 710 Gene3D Cysteine proteinases 137 442 - -
Vifa1g05806 710 MobiDBLite consensus disorder prediction 621 639 - -
Vifa1g05806 710 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 380 398 IPR018200 GO:0004843|GO:0006511
Vifa1g05806 710 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 138 438 IPR028889 -
Vifa1g05806 710 MobiDBLite consensus disorder prediction 680 694 - -
Vifa1g05806 710 Pfam Ubiquitin carboxyl-terminal hydrolase 139 435 IPR001394 GO:0004843|GO:0016579
Vifa1g05806 710 MobiDBLite consensus disorder prediction 590 710 - -
Vifa1g05806 710 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 101 438 - -
Vifa1g05806 710 MobiDBLite consensus disorder prediction 28 42 - -
Vifa1g05806 710 FunFam Ubiquitin carboxyl-terminal hydrolase 20 134 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05806 Vifa-Chr1 905980411 905983721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05806 139 437 Miscellaneous Gene Families AT4G31670 35.922 2.44e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05806 K11855 - gmx:100808015 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05806 1 905980411 905983721 Vifa1g05806 1 905980411 905983721 ECH