Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05392 ATGACATTTAAGAAAGACTTCCAGCAACAAATGGTGCCTGAATGGGAGAAACACTACATGGACTATGAAGGCCTCAAGACAATATTGAAACAACTCAAAAGCAGCAACAAAGTTAAAGACAATAATAAGCTCTTGCATCATCATCATGGTAGCAATAACCAAAGAGATGATGGTATTGAAGATAAGGTTATAGATGTTGAGATATTAGAGAATGATGTAGAAAAAGGTGAAGCTGATGCAAGGTTCTTTGAGAAGCTTGATGAAGAGCTTGACAAGGTTAATGTGTTTTATAAGGAAGAGGTGGAGGCAGTTAAGCATGAAGCAACACTTTTGAGTAAACAAGTTGAGGCTCTAGTTGCTTTGAGAGTAAAAGTTAAAAGCCCTGATCCAGGACTGCAGCAGAAAGACTCTATGGTGAGCACTGAAGTTGATTACAAAAGAATAGACCCTATGGAAGTCCTTGAGAATGTAAAGATTGATAATGCTCTTCAATCTCCAAAATCATCAATCAAAAATGTTTTTACAGATTCAAATGATGTTGAGTTAAGTTTCAATAAAGAAGAGCTGAAAAAAGTTGAAAAACAACTTAGACTTGTGTTTGTTGAGTTCTATCAGAAACTTCTCCATCTCAAAGATTACAGTTTTATGAATCTCTCAGCATTTTCCAAGATCATGAAGAAATATGAAAAGAAAGCGCAAAGAGGAGCTTCGATAGCATACATGAGAGTAGTGGACAACTCTTTTCTCGGTACTTCTGATGAGGTGAGTTTTCTTCTGGAGAAAGTGGAATCTATCTTCATCAGAAACTTCACACATTCAAATCACAAGAAAGGAAGGAAATTGCTAAGGCCGAAAAACAAAAGAGAAAGGCACAGCATAACATTTTTTACGGGCTTCTTTTCTGGTTGCTTTGTTGCTCTACTAGTTGCTACAATACTAAGAATAATATCTCAACATTTAATGAAGAAAAAAGCAGGAACATTTTACATGGAAAACATTTTCCCATTATACAGTCTATTTGGATATATTACTATACATATGCTAATGTATGCTGCAAACACGTATTTTTGGAGGCGATATCGGATTAACTATCAATTCCTGTTCGGTATCAGACCTGGAACTGAGTTGGATCATAGAGATGTATTCCTTCTCACCACTGGCCATGCAGTAATTGCAGTACTATGTTTCTTGATAAATTTGCAGCTTGAGATGAATCAAACCGATAGAAGCTATAAAACAGCCACTGAACTCGTCCCTCTGAGCTTAATTGTCCTTGTCATTTTGATCACCTTTTGCCCTTTCAATATCATATACCGATCAAGTCGTTTCTTCTTTATTCGATGTTTATTCCGCTGCATATGTGCTCCTTTTTTTCCGGTTTCACTTTCAGATTTTTTCTTGGCTGATCAACTTACGAGTCAGTTTCAATCCTTCAGAAGTTTTGTTCTTTACATATGCTATTATGGCCTTGGAGAACACTCAAGGAGGCAAAACAAATGTAGAAGTCACGGTATCTATAATATACAATACTTCATGGCCGGCATCATTCCTTATTGGTTTCGTTTGGCACAGTGTATGCGTCAATTGTACGGCGAGAGAGATATTGACCACGCGATCAATGGTTCAAAGTATCTATCAACAATTGTTGCTATGGTGATTAGGACTACCTTTGAAACAAAGAAGGGAATGACATGGAAGGTGTTGGCACTTATAAGTTCATGTGTAGCAATATTAATGAACACATATTGGGACATTGTGAAGGATTGGAGTCTCTTGCAAAGACATTCGAAGAATCGTTATTTGAGGGATAAACTCATAGTTTCTCACAAAAGTGTCTACTACATAGCCATGGTTGTGAATGTTGTTCTAAGACTTTCATGGATGCAATTGGTGCTTGAACTGGATTGGCGTCCCCTTCATAAAGTGGCGATCAATACATGTATTTCATGTCTTGAAATTATTCGCCGTGGCATATGGAACTTCTTTAGGTTGGAGAATGAGCACTTGAACAATGTTGGAAACTACCGTCCATTTAAGTCAGTTCCTCATCCTTTCAGTTACTATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATAATGGTGACAAGGATGAATAG 2136 0.3703 MTFKKDFQQQMVPEWEKHYMDYEGLKTILKQLKSSNKVKDNNKLLHHHHGSNNQRDDGIEDKVIDVEILENDVEKGEADARFFEKLDEELDKVNVFYKEEVEAVKHEATLLSKQVEALVALRVKVKSPDPGLQQKDSMVSTEVDYKRIDPMEVLENVKIDNALQSPKSSIKNVFTDSNDVELSFNKEELKKVEKQLRLVFVEFYQKLLHLKDYSFMNLSAFSKIMKKYEKKAQRGASIAYMRVVDNSFLGTSDEVSFLLEKVESIFIRNFTHSNHKKGRKLLRPKNKRERHSITFFTGFFSGCFVALLVATILRIISQHLMKKKAGTFYMENIFPLYSLFGYITIHMLMYAANTYFWRRYRINYQFLFGIRPGTELDHRDVFLLTTGHAVIAVLCFLINLQLEMNQTDRSYKTATELVPLSLIVLVILITFCPFNIIYRSSRFFFIRCLFRCICAPFFPVSLSDFFLADQLTSQFQSFRSFVLYICYYGLGEHSRRQNKCRSHGIYNIQYFMAGIIPYWFRLAQCMRQLYGERDIDHAINGSKYLSTIVAMVIRTTFETKKGMTWKVLALISSCVAILMNTYWDIVKDWSLLQRHSKNRYLRDKLIVSHKSVYYIAMVVNVVLRLSWMQLVLELDWRPLHKVAINTCISCLEIIRRGIWNFFRLENEHLNNVGNYRPFKSVPHPFSYYDDDDDDDDDDDDDDDDDNGDKDE 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05392 711 Pfam SPX domain 1 55 IPR004331 -
Vifa1g05392 711 Pfam SPX domain 72 243 IPR004331 -
Vifa1g05392 711 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 694 - -
Vifa1g05392 711 Pfam EXS family 334 669 IPR004342 GO:0016020
Vifa1g05392 711 MobiDBLite consensus disorder prediction 688 711 - -
Vifa1g05392 711 ProSiteProfiles SPX domain profile. 1 242 IPR004331 -
Vifa1g05392 711 MobiDBLite consensus disorder prediction 682 711 - -
Vifa1g05392 711 ProSiteProfiles EXS domain profile. 501 695 IPR004342 GO:0016020
Vifa1g05392 711 CDD SPX_PHO1_like 3 237 IPR034092 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05392 Vifa-Chr1 836056099 836063874 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05392 - - gmx:100795093 1036.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05392 1 836056099 836063874 Vifa1g05392 1 836056099 836063874 ECH