Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05180 ATGTTGGAGGGTCGTTCCTGTGTTGTTCCGAGGTTGTTTTGTAATAGTTGTGAAACGGAGAACGATTGGTCTTACATGAAGTACATGCTGGATTTGGATATTAAGAATGGCAAGAGACCGATGGAAATTGATGATGCTGAGGATGAGGATGAGCTTCATCCTAAGAAGTGTACTAAGATGTTGGAATCTTGTCATATAGTTGAAACGGTTCGTCTTTCGTTTCAGCAGAATAAGGATTCTGTTCTTCCTGGAATAGATCAGGAAATCGTTGAACCTGTGGATGTTTGTCAAGGGGTGAACTCTGGTGATTCAATGAATTCATTGGATTCTGGCATTCAGCAATCTGATGAGGAGCAGCAGGCTGGAGATTCGTCGGATTCTGGTTCACTTTTACCGCGGATGAACCGAGACAGCTCGATTGCTTGTCTCAGCCGCTGTTCAAGGTCTGATTATGGTTCGCTTGCTTCTCTTAATAGAAGCTTTCGGAACATAATCCGTAGTGGTGAGCTCTACACATGGAGGAGACTGAATGGTATCATGGAACATTGGGTTTATTTCTCATGTGCCCTCCTTGAATGGGAAGCCTACGATCCGATTCGCCAAAGATGGATGATTTTGCCGAGGATGGCTTCGAATGAATGCTTCATGTGTTCTGATAAGGAATCTTTAGCTGTAGGAACTGAACTTCTTGTGTTTGGGAGGGAGCTAAGATCTCACGTGATTTATCGGTACAGTCTTTTGACTAACTCGTGGTCATCAGGAATGAGAATGAATGCTCCAAGATGTTTGTTCGGCTCTGCAAGCCTCGGTGAGATTGCGATATTAGCAGGTGGTTGTGATTCCGAGGGACGTATACTCGACTCAGCCGAACTATACAACTCGGAGGCGCAAACATGGGAGCTACTCCCGAGTATGAAAAAACCAAGGAAGATGTGTTCTGGTGTATTTATGGATGGAAAATTTTATGTTATAGGCGGAATCGGCGGCCGCGATTCCAAGCTTCTTACTTGCGGGGAAGAGTACAATCTACAGACTAGAACATGGACGGAGATTCCTAACATGTCACCCGGACGAAGTAGTAGAGGTTCTGATATGCCTGCTACAACCGAGGCACCACCTCTTGTTGCCGTTGTAAATAACGAATTGTACGCTGCTGATTATGCTGACATGGAAGTTAAAAAGTATGACAAGGAAAGAAAACTGTGGAATACCATTGGGAGACTTCCGGAACGAGCGGTCTCGATGAATGGCTGGGGTCTTGCATTTCGAGCATGTGGAAATCGGCTTATTGTTATCGGTGGACCAAGGACTCATGGTGAGGGATTCATTGAGCTCAATTCTTGGGTGCCTAGTGAAGGACCTCCACAATGGCGTCTACTCGATCGAAAACAACGATCCGGTAACTTTGTTTATAATTGTGCTGTGATGGGTTGTTGA 1437 0.4509 MLEGRSCVVPRLFCNSCETENDWSYMKYMLDLDIKNGKRPMEIDDAEDEDELHPKKCTKMLESCHIVETVRLSFQQNKDSVLPGIDQEIVEPVDVCQGVNSGDSMNSLDSGIQQSDEEQQAGDSSDSGSLLPRMNRDSSIACLSRCSRSDYGSLASLNRSFRNIIRSGELYTWRRLNGIMEHWVYFSCALLEWEAYDPIRQRWMILPRMASNECFMCSDKESLAVGTELLVFGRELRSHVIYRYSLLTNSWSSGMRMNAPRCLFGSASLGEIAILAGGCDSEGRILDSAELYNSEAQTWELLPSMKKPRKMCSGVFMDGKFYVIGGIGGRDSKLLTCGEEYNLQTRTWTEIPNMSPGRSSRGSDMPATTEAPPLVAVVNNELYAADYADMEVKKYDKERKLWNTIGRLPERAVSMNGWGLAFRACGNRLIVIGGPRTHGEGFIELNSWVPSEGPPQWRLLDRKQRSGNFVYNCAVMGC 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05180 478 ProSiteProfiles Yippee domain profile. 1 50 IPR034751 -
Vifa1g05180 478 FunFam F-box/kelch-repeat protein SKIP11 176 462 - -
Vifa1g05180 478 MobiDBLite consensus disorder prediction 106 133 - -
Vifa1g05180 478 SMART kelc_smart 228 271 IPR006652 GO:0005515
Vifa1g05180 478 SMART kelc_smart 320 380 IPR006652 GO:0005515
Vifa1g05180 478 SMART kelc_smart 272 319 IPR006652 GO:0005515
Vifa1g05180 478 Gene3D - 176 460 IPR015915 GO:0005515
Vifa1g05180 478 MobiDBLite consensus disorder prediction 350 369 - -
Vifa1g05180 478 Pfam Kelch motif 308 355 IPR006652 GO:0005515
Vifa1g05180 478 Pfam Kelch motif 260 305 IPR006652 GO:0005515
Vifa1g05180 478 MobiDBLite consensus disorder prediction 350 366 - -
Vifa1g05180 478 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 119 478 - -
Vifa1g05180 478 SUPERFAMILY Kelch motif 190 460 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05180 Vifa-Chr1 807600086 807601522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05180 137 353 EF-hand Containing Proteins AT4G39560 26.147 1.21e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05180 - - gmx:100818865 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05180 1 807600086 807601522 Vifa1g05180 1 807600086 807601522 ECH