Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05053 ATGGTTTTAGGAATGAGAGGAAGGAACATGAGAACTAGCAAAGTTCAAGTTGATTATCTGATTCATATTCAAGAGATTAAGCCTTGGCCTCCATCGCAATCTTTAAGATCTCTTCATTCGGTTTTAATCGAAATGAAGAATGGTTCCAACACATTAGGTTCTACTAAACAAGTATCACCTTCACTTGGTTCGGTTATAGGCGAAGGAAGAATTGAATTCAAGGAATCGTTCAGAATTTCGGTGACATTGTTGAGGGATGTATCCATTAGAGGTGGTGATTTTGATGTTTTCCAGAAGAATTTCTTGGAATTCAACTTGTATGAGCCTAGAAAAGATGATAAGATTGTTAAGGGTCAGTTATTGGGAAATGCTGTTATCGATTTGGCAGATTATGGAGTAATTAAAGAGGGATTAAGCATTAGTACTTCTATGAACTGCAAGAGGAGTTACAGAAATAATGATCAACCGGTTTTGTTGATTAAGATTCAGCTGGCTGAAAAGATCCGCGCTCGTTCGTCTTCGTTGCAGGAAAGATTTTCAAACGAGGTTTTGGAGAATAATAGCAACGGTTGCGATTCTGTATCAACATTGATGAATGAAGAATATGCCGAGGAAGCTGAGATTGCTTATTTTACCGATGATGATGATGTTTCTTCACGTTCTTCTGTTGCGGGAGCTTCTACTTCCTTTCAACTTCAGAATGAATCGAATGGACCAATCCGAAAGACTAATTTGGTGCAACAGGATGCATACAAGAAGATGGAAAGTCCATCTCACATGCCGTCGTCAACGGATGCATCATTGTCGAGCGAAAAAGGTGTGTCTTCACCATCTTTAGTTTGTGAAAGTTTAGAAAAAAATTCAAGGATCAGAACAAGAAGCAACGATCATGAAAAGTTCGATGAGAATTTTCATGACAAGGTTACTCATTGTAGAAATATAGTTGAAGATGTTCAAAGAATAAGTAGCAAAAGAGATGCTAAGATTAATCCAAAGGAAGCGAAAAATGGTAATTTAGAAGGTAAAATCGATTACTTGAAAAAGAAGGTAAATAATCTTGAAGGAGAGTTAAGAGAAGCCGCGGCTATTGAAGCTTCTTTATATTCAGTTGTTGCTGAGCATGGAAACTCCATGAGTAAGGTTCACGCCCCGGCTCGGCGTCTTTCGAGGCTTTATCTTCATGCTTGTAGAGAAAAGCTTCAAGGAAGAAAGCATAGTGCAGCTAAAAGTTCTGTTTCAGGATTAGTACTTGTTTCAAAGGCATGTGGAAATGATGTTCCAAGGTTGACATTTTGGTTGTCGAATACTATAGTGTTGAGAATAATTATAAGCCGAAACTTGAAGGGTTTAGTTTCATCAAATCACGGTGGTTCCGACAGGAGAAGAAAATCGGAGGGAAATGGAAAGATAGCATCCTCCTCACAAAGGTGGAGAGGAGGAAAGAATGAAAGTAAAGAAGCATTAGGGTATGAATGTTTTGGTAATTGGGATGATCCTCATGTATTCATTTCAGCATTGGAAGAAGTTGAAGCTTGGATCTTCTCTCGCATAGTAGAGTCTATATGGTGGCAGACTCTAACTCCACATATGCAACATGTTGATACAAATATAACCGACAAAGAAGTAGCTTCTGCATCAAGGAAAAGCTTTCGAACGATATGTAGTTCATGTGATCAAGATAAGAGTAACTTGTCACTAGATATTTGGAAGAATGCTTTTAAGGAAACATTTGAAAGGCTCTGTCCTATTCGAGCTGGAGGACACGAGTGTGGCTGTTTACCAATGATTCCAAAATTGATAATGGAGCAATGTGTCTCAAGATTAGATGTGGCTATGTTCAATGCTATTTTGCGCGAGTCGGGTGATGAAACCCCAACTGATCCTGTCTCTGATGCTATAAGTGATCCTAAGGTTCTTCCTATTCCACCAGGAAGATCAAGCTTTGGAGCTGGTGCTCAGCTGAAAACTGTGATTGGGAACTGGTCTAGATGGTTGAGTGATCTATATGGCATGAATGAAGATGACTCAATTGAAAATAAAGATGGTTCTAATAACAATGAGCAGAAGCATGATTCTTTCACCCTTCTTAATTCACTAAGTGACCTTCTAATGCTTCCTAAAGATATGCTATTAAGTGCATCCATTAGAAATGAGGTATGCCCCATGTTTAGTGCACCACTTATCAAGAAGATTCTTGATAATTTCTTTCCAGATGAGTTTTGCCCTGATCCGGTGCCTATACATGTTCTTGAAGCTCTAGACTTAGAGAATGATATGGAACATGGAAAGGAGTTAGATAACAACTTCACATGTAGCGCAGCTCCGATTTCCTATTCACCTCCGAATGTAACTTCCGTCGCAAGCATTCTCGGAGAGATTGGAAGCAAATCTCAGCTAAGAAGAAACAAATCTTCTGTTGTTAGGAAGTCATACACAAGTGACGACGAGCTCAATGAATTGAAATCTCCATTATCTTCGATATTCTTGTGCGATTCCATATTGTTTTCAGAGGTTTTGACAAAATCGAATTTGAAGTCGAAAGACATTGGTAGTGAATCTCCTGTTAGATATGATCTCCTTAGAGATGTGTGGATGAGTAATAATTAG 2607 0.387 MVLGMRGRNMRTSKVQVDYLIHIQEIKPWPPSQSLRSLHSVLIEMKNGSNTLGSTKQVSPSLGSVIGEGRIEFKESFRISVTLLRDVSIRGGDFDVFQKNFLEFNLYEPRKDDKIVKGQLLGNAVIDLADYGVIKEGLSISTSMNCKRSYRNNDQPVLLIKIQLAEKIRARSSSLQERFSNEVLENNSNGCDSVSTLMNEEYAEEAEIAYFTDDDDVSSRSSVAGASTSFQLQNESNGPIRKTNLVQQDAYKKMESPSHMPSSTDASLSSEKGVSSPSLVCESLEKNSRIRTRSNDHEKFDENFHDKVTHCRNIVEDVQRISSKRDAKINPKEAKNGNLEGKIDYLKKKVNNLEGELREAAAIEASLYSVVAEHGNSMSKVHAPARRLSRLYLHACREKLQGRKHSAAKSSVSGLVLVSKACGNDVPRLTFWLSNTIVLRIIISRNLKGLVSSNHGGSDRRRKSEGNGKIASSSQRWRGGKNESKEALGYECFGNWDDPHVFISALEEVEAWIFSRIVESIWWQTLTPHMQHVDTNITDKEVASASRKSFRTICSSCDQDKSNLSLDIWKNAFKETFERLCPIRAGGHECGCLPMIPKLIMEQCVSRLDVAMFNAILRESGDETPTDPVSDAISDPKVLPIPPGRSSFGAGAQLKTVIGNWSRWLSDLYGMNEDDSIENKDGSNNNEQKHDSFTLLNSLSDLLMLPKDMLLSASIRNEVCPMFSAPLIKKILDNFFPDEFCPDPVPIHVLEALDLENDMEHGKELDNNFTCSAAPISYSPPNVTSVASILGEIGSKSQLRRNKSSVVRKSYTSDDELNELKSPLSSIFLCDSILFSEVLTKSNLKSKDIGSESPVRYDLLRDVWMSNN 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05053 868 MobiDBLite consensus disorder prediction 251 280 - -
Vifa1g05053 868 MobiDBLite consensus disorder prediction 257 280 - -
Vifa1g05053 868 MobiDBLite consensus disorder prediction 454 482 - -
Vifa1g05053 868 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 13 163 IPR019448 -
Vifa1g05053 868 Coils Coil 336 363 - -
Vifa1g05053 868 ProSiteProfiles C2 NT-type domain profile. 7 166 IPR019448 -
Vifa1g05053 868 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 3 237 IPR021827 GO:0005643
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05053 Vifa-Chr1 787468796 787472570 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05053 - - mtr:112422722 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05053 1 787468796 787472570 Vifa1g05053 1 787468796 787472570 ECH
Vifa1g05053 1 787468796 787472570 Vifa1g05053 1 787468796 787472570 PCT