Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05038 ATGGTTTTCCCAAATTTGATGAACTCCGGGGTTTTGATCCTATGTATTTTAGTTTTAGCAACTCGAAATTATCAAGCATGCGCTTTTCGTAATTATAAAACTTGGACTCCAAGTAATCCAAATAATCCAAAACATGATGAAACTTCCTTTAGGGGTTTATGCGCTGATTCCATCACTCCCCAAGGATATAAATGCCAAGAATTTGAAGTTATAACAAAAGATGGATATATTCTTAGCATTCAAAGAATTCCAGAAGGTCGATCTGAGTTAAGTAGTAACGTGACTAAGAAGGAAACAGTGGTAATACAACATGGAATAATGATGGATGGATCATCATGGTTTATGAACAGTCCAAGCCAAAACCTGCCTATGATTCTTGCTGATGATGGCTTCGATGTTTGGATTACTAATACTAGAGGAAGCAAATATAGTCGCAATCACACTTCCTTAGACCCCTCTAACGAGAAATATTGGGATTGGTCTTGGGATGAATTGGTCAGTGATGAAATGCCAGCTATTATTGATTTTGTCTTCAACCAAACAGGGCAGAAGATAAATTATCTTGGCCATTCTTTGGGAACTTTGGTAGCTTTGGTATCTTTGTCAGAGGGTAATTGGATAAATCAGGTGAAATCAGTAGCATTGTTGAGTCCTATTGCCTATTTGAAAAATATGAAAACTAAACTTGGAGTTATGAGTGCAAATTATGTATACGGCAAGAAATTTACTCCAAGGGACATTACTGAATTTGATCCCAAAGGACAAAGAGTCCTAGACTTTGTCGATGGTATTTGTAATCACTATGGACTAAACTGCAACAACCTGTTTAGTGCACTAACAGGTGAAAATTGTTGCTTAGATGAAGCAGCTTTTGTTCGATTCATGAAAGTTGAACCTCAACCAACGTCAAACAAGAACGTGATTCATATAGCTCATATATTTTTAAGTGATAGTTTGGCGAAATTCGACTATGGGAGGCCTCATCTAAACAGGTTCCATTATGGACAATCAAAACCTCCGATCTATGACCTTTCAAACATTCCTAATGATATTCCAATTTTCATGAGCTATGGTGGTCATGACGCGCTCTCCGATCCCGTCGATGTTAATAAATTACTTAGTATACACTTTCAGAACCATGATAAAGGCAAGCTTAGTGTTCAGTTCATTGAAGAATATGCTCATGCTGACTACATGATGGCTGTAAATGCCAATGAGTTGGTGTATAAAAATGTTTCATCATTTTTCAAGCAGAAATTTTGA 1263 0.3682 MVFPNLMNSGVLILCILVLATRNYQACAFRNYKTWTPSNPNNPKHDETSFRGLCADSITPQGYKCQEFEVITKDGYILSIQRIPEGRSELSSNVTKKETVVIQHGIMMDGSSWFMNSPSQNLPMILADDGFDVWITNTRGSKYSRNHTSLDPSNEKYWDWSWDELVSDEMPAIIDFVFNQTGQKINYLGHSLGTLVALVSLSEGNWINQVKSVALLSPIAYLKNMKTKLGVMSANYVYGKKFTPRDITEFDPKGQRVLDFVDGICNHYGLNCNNLFSALTGENCCLDEAAFVRFMKVEPQPTSNKNVIHIAHIFLSDSLAKFDYGRPHLNRFHYGQSKPPIYDLSNIPNDIPIFMSYGGHDALSDPVDVNKLLSIHFQNHDKGKLSVQFIEEYAHADYMMAVNANELVYKNVSSFFKQKF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05038 420 PANTHER LYSOSOMAL ACID LIPASE-RELATED 55 417 - -
Vifa1g05038 420 PIRSF Steryl_ester_lip 7 420 IPR025483 GO:0016788
Vifa1g05038 420 FunFam Lipase 46 418 - -
Vifa1g05038 420 Pfam Partial alpha/beta-hydrolase lipase region 56 116 IPR006693 GO:0006629
Vifa1g05038 420 SUPERFAMILY alpha/beta-Hydrolases 56 417 IPR029058 -
Vifa1g05038 420 Gene3D alpha/beta hydrolase 42 418 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05038 Vifa-Chr1 785395799 785398499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05038 53 419 Acyl Lipid Metabolism Gene Families AT2G15230 34.060 2.90e-83 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05038 K01052 - psat:127097130 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05038 1 785395799 785398499 Vifa1g05038 1 785395799 785398499 PCT