Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05022 ATGAGTTATAGTGTGTCTAGTAAAAGATCATTACCTATGTGGAGTTTCTATAATGGTGGAATTTGTAGAAATTCACCAAACTCCTTGAGAACTCTAGATTTGTCACTTTCTAGTGACAATGGTTACTCCTCAGGTGAAAAACCTCAGGATGCAGATTATGTTCTACCCTTACCATATCTCAGTGATGAGATAGAGACAATGATATTGTCAAGGTTTCCGATATCGAAATACTGGAAAATGTGTTGCTTAAACAAGAAGTATTTGAATGTAATGAAGAGTGGTGAAGTTTATAAGATAAGGAGTATGATAGGGTTGAAAGAACCCTTAGTTTTTATGTTGGCAAGTGGTGAGAGGAATTGGTGTGTGTTTGATGCTGAATTCAAGTCATGCAAGAAATTGCCAATTATTCCATCTGATTACAAATTTGAATGTGTTGTTAAAGAGACCTTTTCTGCTGGCACACATTTGTTTGTTTCAGGTGTGGAGATTGATGGAGCGGTTATATGGAGATATGAACTAACAACAAATGAATGGTTCAAAGGTCCATCAATGATAACACCAAGGTGTGTCTTTGCATCAGCTTCATCTAACACTTTTGCTTATATTGCTGGTGGACTTGAAACAAAAAACTGCATTATTGAAGTCTTAAACTCAGCCGAAAAATACAATTCAGAAAACCAAACATGGCAAAAACTCCCAAACATGAACCAAAAGAGAAAATGTTGTTCAGGTTGTTACTTGGACAACAAGTTTTATGTAATTGGAGGACAAGATGAAAAAGAGAATCTAACATGCGGTGAATTCTTTGACGAAAAGACCAACAAATGGAACTTGATTCCAAACATGTTGAAAGATATAGTTCTTTCGAGTTCAGGATCACCGCCTCTTATAGCCGTTGTTAACAATGAATTGTACGCGCGTGATGCTTCATCGAACGAGGTTAAGGTTTATGTGAAAGGTAAGAATTTGTGGAAGAAATTAGGGTTTGTTCCTGTGAGAGCTGATATACCTGGTTGGGGGATAGCATTCAAATCTTTGGGAAATGAATTGCTTGTTATTGGTGCTAGTTCTAATGCTTGTTCACATACAACTATGAAGATTTTTACTTGTGTGCCTCATCATGATTCTGAGGTTTTAGAATGGAAGGAAGTTGTGTGTGGTAGTGGAAATCTTAATCCTTTTATTCATAATTGTGCTATTATGTTAGCATGA 1212 0.363 MSYSVSSKRSLPMWSFYNGGICRNSPNSLRTLDLSLSSDNGYSSGEKPQDADYVLPLPYLSDEIETMILSRFPISKYWKMCCLNKKYLNVMKSGEVYKIRSMIGLKEPLVFMLASGERNWCVFDAEFKSCKKLPIIPSDYKFECVVKETFSAGTHLFVSGVEIDGAVIWRYELTTNEWFKGPSMITPRCVFASASSNTFAYIAGGLETKNCIIEVLNSAEKYNSENQTWQKLPNMNQKRKCCSGCYLDNKFYVIGGQDEKENLTCGEFFDEKTNKWNLIPNMLKDIVLSSSGSPPLIAVVNNELYARDASSNEVKVYVKGKNLWKKLGFVPVRADIPGWGIAFKSLGNELLVIGASSNACSHTTMKIFTCVPHHDSEVLEWKEVVCGSGNLNPFIHNCAIMLA 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05022 403 SUPERFAMILY Kelch motif 117 369 IPR015915 GO:0005515
Vifa1g05022 403 SMART kelc_smart 155 198 IPR006652 GO:0005515
Vifa1g05022 403 SMART kelc_smart 201 249 IPR006652 GO:0005515
Vifa1g05022 403 SMART kelc_smart 250 302 IPR006652 GO:0005515
Vifa1g05022 403 Pfam Kelch motif 201 236 IPR006652 GO:0005515
Vifa1g05022 403 Pfam Kelch motif 239 282 IPR006652 GO:0005515
Vifa1g05022 403 Gene3D - 95 384 IPR015915 GO:0005515
Vifa1g05022 403 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 58 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05022 Vifa-Chr1 782698961 782700316 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05022 91 279 Miscellaneous Gene Families AT4G33900 26.047 7.96e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05022 - - ccaj:109807283 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05022 1 782698961 782700316 Vifa1g05022 1 782698961 782700316 ECH