Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05006 ATGGAGTTTTTCAACAAATCAAAAGCGATTAAGCTTCGAAGCCACTTAGATAAGTACCTAATAGTCGACGACGACAAAATCAGCAAAATCAAAATCCGTCAAAGCCGAAATGGAACCGTTAGAAGAGCTCAATGGACGGTAGAACAAGTCGAAAATCGTCGAGACGTGATACGGTTAAAGAGCTATAACGGAAAATACTTAACGGCAACAGAAATACCGTTTCTATTAGGCGTGACGGGAAAAACGGTTATAGTAACGGAGTTGGAAGAAGGTTTAGTAGATGGAAGAAACGAGTGGGAACCGATAAGGGATGGGTTTCAAATAAAGTTGAGGAGTTGGTGTGGGAAGTGGTTGAAGGGAAACGGCGGAGCGCCGCCGTGGAGGAACAGTGTGACGACGGATGATTGGTTTGGTTCTGGGAAGCAGGATTCAGTTCTGTGGGATGTTGAAGCGGTGGTGGAAGAGAATATGAGTGAATTGGTTTTTGAGAGATTGTTATCGTCTTTTGCTTCTGATGATGTTACTTTTGATTCCGATACGGAGTCTCCGGTGTCGGTTATCTCCATTTCGTCGCCGCCGGCAAGAGAGAATTTTCAGAAAAATATGCAGACAACAAAACCCAACAAGCTCCGAACTGGAATGGACTTCTTTCACAGGGCAAAAGCAGTCCGTCTCAAAAGCCACCACGACAAATACCTATTAGCAGAAGAAGACGAAGAGTCCGTCACACAACACAGGAACGGTTCCTCAAATAACGCTAAATGGACAGTCGAGTATGTCCCAGATTACGACAACGTTATTCGTCTCAAAAGCTGTTACGGTAAATACCTCACAGCTTCCGACCACCCTTTCCTCCTCGGCATGACGGGTCGGAAAGTTCTTCAAACACTTCCGCAAACAGTTGATTCTTCTGTTGAATGGGAACCCATTAGAGACGGTGTTCGTGTGAAGCTGAAGACGCGGTACGGGAATTTTCTTAGAGGGAATGGTGGGTTGCCTCCGTGGAGGAATACTGTGACGCATGATATTCCTCATAGAACTGTTACTCAGGATTGGATTTTGTGGGATGTTGATATTGTTGAGATTAATGTTAGTAAACATGGTTCGGATCTACCTACCGAAACCAACAACACGCATTCACCTGCTGTTGTTGTGCCTACTGTTTCTGCAAGCTTTTCTAGGCAACAGTCTAGTGAATCGAGTGTTGGTGTTTCTCCGAAGACGAAAGAGGGTAGAGTTATATACTACCATGTTGCTGAAGATGATAGAGAGGTGAGTGATGAAGGTGGGCAAGGATATTCTTTGGTTTTCAAAGGGAACGGAGTTGAGGAATTGAGGAAGAAGTTTGAGGAAGAGACAGGGTTAGAGGGAATCATTGTGTGTAATAAGAGTCCTTTGAATGGAAAACTTTATCCTCTTCACTTGCAGCTTCCTCCAAACAATGTAACTATGCATGTTGTTTTGGTTCTTCCCTTCTCAAAAGTGGCAACAGAGTTGGAGGCACAAGGTTTACTTTGA 1518 0.442 MEFFNKSKAIKLRSHLDKYLIVDDDKISKIKIRQSRNGTVRRAQWTVEQVENRRDVIRLKSYNGKYLTATEIPFLLGVTGKTVIVTELEEGLVDGRNEWEPIRDGFQIKLRSWCGKWLKGNGGAPPWRNSVTTDDWFGSGKQDSVLWDVEAVVEENMSELVFERLLSSFASDDVTFDSDTESPVSVISISSPPARENFQKNMQTTKPNKLRTGMDFFHRAKAVRLKSHHDKYLLAEEDEESVTQHRNGSSNNAKWTVEYVPDYDNVIRLKSCYGKYLTASDHPFLLGMTGRKVLQTLPQTVDSSVEWEPIRDGVRVKLKTRYGNFLRGNGGLPPWRNTVTHDIPHRTVTQDWILWDVDIVEINVSKHGSDLPTETNNTHSPAVVVPTVSASFSRQQSSESSVGVSPKTKEGRVIYYHVAEDDREVSDEGGQGYSLVFKGNGVEELRKKFEEETGLEGIIVCNKSPLNGKLYPLHLQLPPNNVTMHVVLVLPFSKVATELEAQGLL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05006 505 Pfam Domain of unknown function (DUF569) 1 147 IPR007679 -
Vifa1g05006 505 Pfam Domain of unknown function (DUF569) 214 355 IPR007679 -
Vifa1g05006 505 SUPERFAMILY Actin-crosslinking proteins 5 147 IPR008999 -
Vifa1g05006 505 Gene3D - 5 138 - -
Vifa1g05006 505 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 214 489 - -
Vifa1g05006 505 FunFam BnaC05g19630D protein 5 150 - -
Vifa1g05006 505 Gene3D - 222 340 - -
Vifa1g05006 505 SUPERFAMILY Actin-crosslinking proteins 218 360 IPR008999 -
Vifa1g05006 505 FunFam BnaC05g19630D protein 218 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05006 Vifa-Chr1 780943313 780948770 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05006 - - gmx:100797561 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05006 1 780943313 780948770 Vifa1g05006 1 780943313 780948770 ECH