Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04941 ATGTCCTCGAGACGCCACTCGCTGAGTGGTCCTCCTCAACTCAGTGGTACCGCTTCGACTCACGAGCTCCGGCAACGAGTCATCACCTGTCTCAACAAACTCTCCGACCGCGACACTCTCGCCGGAGCTAGTTTAGAGCTTGAATCCATCGCTAGAACCCTAAATAATGACTCGTTCTCATCTTTTCTCTCATGCATTCATAACACCGATTCGTCTTCTAAATCTCCGGTTCGGAAACAATGTGTTAACCTTTTGAGCCTTCTATCGCGTTTCCATGGTGACGCGATGTCTCCTTTTATCTCAAAGATGATTGCTACAGTTCTCCGTCGGTTGAGGGATCCCGACTCGGTTGTACGATCCGCTTGCGTCGACGCTGTTGCTGAGATGTCGTCGCGCATCACTCGTCCTTCGTTCACCGTTGCGTTCCTGAGGCCGTTTATGGACGCATTAACGCTGGAGCAGGACGTGAATGTGCAGATCGGCGCTTCGCTGTGCCTTGCCGCGGCTATCGATGCAGCGCCGGAGCCGGACGTTGAGTCGCTCCGGAGGACTACGCTTCCGAGGCTAGGGAAGCTTCTGAAGACAGACTCGTGTAAGGCGAAGGCGCCGTTGTTGGTGCTGGTCGGGAGTGTGGTTTCCGTTGGTGGTGCTTCGAGTCGTGGAGTAATGAGTTGGTTGGTTCCGTGCGTTGTTGAGTTTCTCGGCAGTGAGGATTGGAATGTGAGAAAAGCCTGTGCGGAAGCGTTGGGGAAAGTAGCTTCAATGGAGAAAGATTTGGCATCGCAGCATAAAGTTCTGTGTATGGATTCGTTGCAGAATAAACGGTTTGATAAGGTCAAAGTTGTTCGTGAGACTATGAATCTGGCATTGGATATGTGGAAGGAAGTAAAAGATGTGTCTGAAAATGCTCCTACTCCGGTTAAGTCTGCATGTGTTTCAGTTGAAGATGGTAAAGGTCTATGTGCAACCAAAAATTCACCCTTTGTTGGCTCTAAATTGTCCCAACTAAATAAAATGGTTCGTTCTAAAAGGTCACCTCCATCAACAGTTTCATTAAAATCCTCTGGCAAAAGAGAGATTCCTATAAAGAGTAATGAAAAGTATTCAAGAATGGGGGTGTTGAGCCAGCAAGATCATGAAAAATTATCTGATGAAAAACTTCAAACTCCATTATCAAAGTCCTCTCATTCAAACATGACCAATGAAGATGATATTAAAAGGTGTGATTTTGAATCTTCCAAGTCACCCACATATCAGAATGCGACAAATTCGAGAGCTGATGTAAAGCAAGTTTTCCTTAACAAGATGTCAGACGAGAAAGTGCGGAAGTTTGGTGGTTCAAATTCTCGCGTAGTTCCATGTGATGACGTTGATGATCTTGACACAGATGTTACTGTCAACAATGTAAATGAAGTTTGTGAGAGCCCACAAGATGTTGAAGATTTGTCTTTGATACGGGAACAACTTTTACAAATAGAAAACCAACAGTCAAATCTATTAGACCTCCTCCAGAGATTTATTGGAACCTCCCAAACTGGGATGAATTCTCTGGAGACCCGGGTACATGGTCTAGAGATGGCATTGGATGAAATATCATATGATTTGGCAGTATCAAGTGGCAGGATTCCCAACACTGATGCCATAGAAGATATGTGTTGCAAGCTACCTGGTACTGACTTTCTGAGTTCTAAATTCTGGAAGAAGACAGAAGGTCGGTATTCGACGACGTCAAGGTTCTCTTTCGGAAGCTCAGCACCAATAAATAATGTGCATAATGCAACTCATAGAAATGGAAGCAAAGAAATATTAACTACAAATAGCAAAAGATTTCAGCAACGCAGGGATGAGGGTGGATATCTTGTGAACCCATTGCCAGAAATTCAAAGTGATTTGATGGGTCGTTCTGGGCAACATTCATATAAAATCTCTAAAAATTTTGTTCAAGATGCTGGGAGTGCACTAAGTAACAGTTCCCGCAGATTTGATGGCATTTCATCAACTAGGGAAATACCAAGGAACCAGAATATCAGGTCATCCGCTTAG 2043 0.4469 MSSRRHSLSGPPQLSGTASTHELRQRVITCLNKLSDRDTLAGASLELESIARTLNNDSFSSFLSCIHNTDSSSKSPVRKQCVNLLSLLSRFHGDAMSPFISKMIATVLRRLRDPDSVVRSACVDAVAEMSSRITRPSFTVAFLRPFMDALTLEQDVNVQIGASLCLAAAIDAAPEPDVESLRRTTLPRLGKLLKTDSCKAKAPLLVLVGSVVSVGGASSRGVMSWLVPCVVEFLGSEDWNVRKACAEALGKVASMEKDLASQHKVLCMDSLQNKRFDKVKVVRETMNLALDMWKEVKDVSENAPTPVKSACVSVEDGKGLCATKNSPFVGSKLSQLNKMVRSKRSPPSTVSLKSSGKREIPIKSNEKYSRMGVLSQQDHEKLSDEKLQTPLSKSSHSNMTNEDDIKRCDFESSKSPTYQNATNSRADVKQVFLNKMSDEKVRKFGGSNSRVVPCDDVDDLDTDVTVNNVNEVCESPQDVEDLSLIREQLLQIENQQSNLLDLLQRFIGTSQTGMNSLETRVHGLEMALDEISYDLAVSSGRIPNTDAIEDMCCKLPGTDFLSSKFWKKTEGRYSTTSRFSFGSSAPINNVHNATHRNGSKEILTTNSKRFQQRRDEGGYLVNPLPEIQSDLMGRSGQHSYKISKNFVQDAGSALSNSSRRFDGISSTREIPRNQNIRSSA 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04941 680 Gene3D - 13 355 IPR011989 -
Vifa1g04941 680 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g04941 680 FunFam ARM repeat superfamily protein 23 213 - -
Vifa1g04941 680 Coils Coil 485 505 - -
Vifa1g04941 680 MobiDBLite consensus disorder prediction 373 387 - -
Vifa1g04941 680 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 15 663 IPR033337 GO:0005874|GO:0008017
Vifa1g04941 680 MobiDBLite consensus disorder prediction 337 402 - -
Vifa1g04941 680 MobiDBLite consensus disorder prediction 337 355 - -
Vifa1g04941 680 Pfam HEAT repeat 226 254 IPR000357 GO:0005515
Vifa1g04941 680 ProSiteProfiles HEAT repeat profile. 226 264 IPR021133 -
Vifa1g04941 680 SUPERFAMILY ARM repeat 23 291 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04941 Vifa-Chr1 770719491 770723735 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04941 - - tpra:123906851 1031.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04941 1 770719491 770723735 Vifa1g04941 1 770719491 770723735 ECH