Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04900 ATGACTCTTCCACTACTTTTCTTCACACTATCTTTTCTTTTGGGCCAATCAATTTCTGACCCTGACGCACTTCAAGATTATTGCATTGCAGACAACAAAAACACATTTTTCATAAATGGGCTACCTTGCATTGACCCAAAACAAGCAACATCATCTCATTTTGCAACATCCTCATTATCCAAGCCCGGTAACACATCAAACATGTTCGGGTTCAATGTCACGCCAACAAGCCCAATTAACCTACCTGGGCTTAACACATTGGGCCTTACGTTAGTTCGTGTCGATATAGCAGGTAACGGAATCGTACCACCGCATTCTCACCCGCGGGCCTCGGAAGTTACCACGTGTTTAAAAGGGCTTTTACTTGTGGGCTTTGTCGATACATCGAATCGGGCTTTTACGCAGAATTTAAGCCCGGGTGAATCGTTTGTTTTTCCTAAAGGACTTGTGCATTTTTTGTATAACCGGGATTCTAAGGAACCAGCCATTGCAATTTCTGGGCTTAATAGTCAGAATCCAGGTGCACAAATTGCTTCAATTGCAACATTTGCTAGTAAACCTTTTATTCCTAATGAAATACTTAAGAAGGCTTTTCAAATTAGTGGTCAAGAAGTTGAAATTATTAGGAAGAAACTTGGTGGTTGA 645 0.4109 MTLPLLFFTLSFLLGQSISDPDALQDYCIADNKNTFFINGLPCIDPKQATSSHFATSSLSKPGNTSNMFGFNVTPTSPINLPGLNTLGLTLVRVDIAGNGIVPPHSHPRASEVTTCLKGLLLVGFVDTSNRAFTQNLSPGESFVFPKGLVHFLYNRDSKEPAIAISGLNSQNPGAQIASIATFASKPFIPNEILKKAFQISGQEVEIIRKKLGG 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04900 214 PRINTS Germin signature 169 184 IPR001929 GO:0030145
Vifa1g04900 214 PRINTS Germin signature 135 155 IPR001929 GO:0030145
Vifa1g04900 214 PRINTS Germin signature 105 125 IPR001929 GO:0030145
Vifa1g04900 214 SMART Cupin_1_3 57 206 IPR006045 -
Vifa1g04900 214 CDD cupin_OxOx 20 212 IPR001929 GO:0030145
Vifa1g04900 214 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 208 - -
Vifa1g04900 214 ProSitePatterns Germin family signature. 100 113 IPR019780 GO:0030145
Vifa1g04900 214 FunFam germin-like protein subfamily 2 member 1 19 214 - -
Vifa1g04900 214 Gene3D Jelly Rolls 19 214 IPR014710 -
Vifa1g04900 214 SUPERFAMILY RmlC-like cupins 20 210 IPR011051 -
Vifa1g04900 214 Pfam Cupin 58 205 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04900 Vifa-Chr1 764330185 764330829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04900 5 213 Miscellaneous Gene Families AT5G39130 43.192 9.31e-52 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04900 - - psat:127119436 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04900 1 764330185 764330829 Vifa1g04900 1 764330185 764330829 ECH