Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04861 ATGTTAGTTGATTCTTGTCCTATCCTATCCAAGTGGAGAAGATACAGCCCCGATATCCAAACCTGCAATGTCCATGATGTCTCCGGCGGCTTGTTCGATGGATTGACAAAACTCATTGAATCAAAGACCAAAATCAATATCCCTCCCCGTTATTTACGCAATCTTCCAGATGAAGAATTGAGCAAGAAATATGGAGAAATTGGACAAAAGACTAAAGAAAAAGCCGAGGAAATGTTGGAGGCGATGGACTACTTAGAAAAATACGGATTCTTAAACTCTTCCACTTCGCCTTCAGATCTGGTGGACGAATCTTCAATAATCAAATTTCAGAAATTTTTTAATCTCAAAAATACAGGTATGCTTGATAGAAATACAACTGATACACTTACAAAGCCACGTTGTGGTGTTCCTGACAATCTCAACGCCAAGTCCTTTAAACCATGGTGGACGGGGAACCAATTAACATATGCTTACCCCAAAGATAACGTCCCAAACAACATTAAGTCTTTGTTTCAAAACGCGTTTAACCGTTGGTCAAAAGTAACTGGGTTGAACTTTACAGAGACGATGTCGTTTAAAAATTCGAATATCAAAATACTAGTTTTAGACTTAGACGGAAAGGGTAAAATGGTTGGAGGCACTTATCTAAACAAAGCTAAAAATGTTGGGATTATGTATTTTGATATAAACGAACAATGGTCGAGTAAGAGTGATATTAAACAGGATGAAGTTGATTTTGAATCAGTTGTGATGCATCAAATTGGTCATTTATTAGGGTTGGAACATTCTTCTGTGGAAGAGGCTATTATGTATCCCATTGTGTTGCCGATACAGAAGATTGAATTGGTGAATGATGATGATTTGCAGAAGATTCAACAAATATATGGTGTCCAAAATGATAAATCAGATTCAAATGCCAAAACTGATGCATCAAATTCAACTGTCAAAAAAGATGCATCTGATTCAAGTTGGCCAGTGGTCTTTTGGCCTTTAGGCTTCTGTGGGTTTGTTGTATATTTCTTTGGGCTACTGTGA 1035 0.3729 MLVDSCPILSKWRRYSPDIQTCNVHDVSGGLFDGLTKLIESKTKINIPPRYLRNLPDEELSKKYGEIGQKTKEKAEEMLEAMDYLEKYGFLNSSTSPSDLVDESSIIKFQKFFNLKNTGMLDRNTTDTLTKPRCGVPDNLNAKSFKPWWTGNQLTYAYPKDNVPNNIKSLFQNAFNRWSKVTGLNFTETMSFKNSNIKILVLDLDGKGKMVGGTYLNKAKNVGIMYFDINEQWSSKSDIKQDEVDFESVVMHQIGHLLGLEHSSVEEAIMYPIVLPIQKIELVNDDDLQKIQQIYGVQNDKSDSNAKTDASNSTVKKDASDSSWPVVFWPLGFCGFVVYFFGLL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04861 344 PANTHER MATRIX METALLOPROTEINASE 70 306 - -
Vifa1g04861 344 SMART col_5 145 297 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vifa1g04861 344 SUPERFAMILY PGBD-like 74 138 IPR036365 -
Vifa1g04861 344 Pfam Matrixin 149 296 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vifa1g04861 344 PRINTS Matrixin signature 171 186 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vifa1g04861 344 PRINTS Matrixin signature 283 296 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vifa1g04861 344 PRINTS Matrixin signature 249 274 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vifa1g04861 344 PRINTS Matrixin signature 129 142 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vifa1g04861 344 Pfam Putative peptidoglycan binding domain 76 128 IPR002477 -
Vifa1g04861 344 Gene3D Collagenase (Catalytic Domain) 66 303 IPR024079 GO:0008237
Vifa1g04861 344 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 149 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04861 Vifa-Chr1 759551561 759552749 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04861 - - psat:127119423 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04861 1 759551561 759552749 Vifa1g04861 1 759551561 759552749 ECH