Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04841 ATGTCTAATTCTTCGAGGGGCCGAGTTACCATTACTCTTGGACGCAGCGGTCAGGTTGTGAAGAGGGATGTATCTGCGGCAGATGTTGCTTACTCTTCTTCTATGTCTTCAGCTGGGAGTAAGCGGTCTGTGAGAGACAGAATTGGAAATAATGCAGATAGTTCCATGTGGCATGGGAATGGGCTCGGCGGCAATAAAAGACAGCGAGGAGATGTAAGCTTGCAAAAGGGACAAGATGGTAATCGGCGTATTGGAAAAGACGATCTCCGATTGAAACTCATGCAAAAAAGTGCAGGGAAGAGGACTGAAAGTAATGGCAATAAGAGGAATGTTGATCTCCGTGAAAAATTGTCGAAGACCGCTTATCCTCCGACAAACAGTTTTAATTCAAAGCAGCGCATGCCTGAACCAAGGGAAACAAGCTCGTACAGGCTAGTTCCCTCAGCTAGAAGTTCTGAGGATTTAATGCGTATGGAATCCATGAGAAGCTCATACTCTCCTTGGACACTGGATCAAATTCGGCAAAGATCACCCGACGGGTTTCCAAGTTCTTCCAGGGGGATTTCCCCCCAAAGAAATGTTGGAGACCCTCAGAGAAGGCCTTTAAACAGGACATACGATGGAGTCAGACCAGTTTCTTATGCAGGTAGGGATGTTCTTGAAACTTCAAGGCCTCCAAGTGCTGCACCATCATCTTTTATGTCAAGATCCGGAATATCGTCATTGCCTCCAGTAACTGCCAAACCGGTAGCATCTCGTCCTGGCCAGCATCCTCCATCAAGCAGCGTTGCGCAAAGGGTTCCATTTGTGGGTGAAGAACAGCAACCACAAACTGTCGATGGCCTGTTGCAAGCACTGGGACTACAAAAATATGTCATACTCTTCAAGGCCGAGGAAGTGGATATGACAGCACTGAAGCAGATGGGAGAAAATGACCTTAAAGAGCTTGGAATTCCTATGGGTCCAAGGAAAAAACTTCTTCTTGCACTCTTGCCTCGTAAACGACAGCAGTGTTGA 1017 0.469 MSNSSRGRVTITLGRSGQVVKRDVSAADVAYSSSMSSAGSKRSVRDRIGNNADSSMWHGNGLGGNKRQRGDVSLQKGQDGNRRIGKDDLRLKLMQKSAGKRTESNGNKRNVDLREKLSKTAYPPTNSFNSKQRMPEPRETSSYRLVPSARSSEDLMRMESMRSSYSPWTLDQIRQRSPDGFPSSSRGISPQRNVGDPQRRPLNRTYDGVRPVSYAGRDVLETSRPPSAAPSSFMSRSGISSLPPVTAKPVASRPGQHPPSSSVAQRVPFVGEEQQPQTVDGLLQALGLQKYVILFKAEEVDMTALKQMGENDLKELGIPMGPRKKLLLALLPRKRQQC 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04841 338 Pfam SAM domain (Sterile alpha motif) 275 330 IPR001660 GO:0005515
Vifa1g04841 338 MobiDBLite consensus disorder prediction 29 263 - -
Vifa1g04841 338 MobiDBLite consensus disorder prediction 225 242 - -
Vifa1g04841 338 SMART SAM_4 271 336 IPR001660 GO:0005515
Vifa1g04841 338 MobiDBLite consensus disorder prediction 120 136 - -
Vifa1g04841 338 Gene3D - 277 338 IPR013761 -
Vifa1g04841 338 ProSiteProfiles SAM domain profile. 274 337 IPR001660 GO:0005515
Vifa1g04841 338 PANTHER SCP160 217 336 - -
Vifa1g04841 338 MobiDBLite consensus disorder prediction 29 58 - -
Vifa1g04841 338 MobiDBLite consensus disorder prediction 80 116 - -
Vifa1g04841 338 MobiDBLite consensus disorder prediction 158 198 - -
Vifa1g04841 338 SUPERFAMILY SAM/Pointed domain 275 334 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04841 Vifa-Chr1 756404353 756410512 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04841 273 330 Glycosyltransferase AT3G07170 56.897 7.56e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04841 - - gmx:100797199 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04841 1 756404353 756410512 Vifa1g04841 1 756404353 756410512 ECH