Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04715 ATGCTATGCTCTCTAATCCGTTTGCGCCGTAACTCTTCTTCAACCTCATTCCTTCATCGTCTCAGTAACCGTTTCTATTCATCTTCCACCGTATTCGCCGCCGCATCCGCCGCCATGGTTGTTCACGCTAAGGACGAATCCTACCTAAGCGCAACCATCCCAAAGCGCGTCAGTTTATTCGAGGCGATTCAGGCGGAGCAACAGACTCGCCGCCTATCACTGTCACCGGATCCGATCAAGGTAACACTCCCCGACGGAAAAGTGAAGGAAGGAAAGAAATGGCAGACAACTCCGTTTGATGTGGCTCGTGAAATCTCTAAGAATTTGGCCAATAATGCTCTTATTTCTAAGGTTAATGGTGTGCTATGGGATATGAATCGTCCTCTTGAAGAGGATTCGTTGCTTCAGATATTTAAGTTTGATGATGATGAAGGACGTGACACTTTTTGGCATTCTAGTGCTCACATTCTTGGACAGTCTCTTGAGACGGAGTATGGATGCAAGCTCTGCATTGGGCCTTGTACTACCAGAGGAGAGGGTTTCTATTATGACGCTTTTTACGGTGAATTGGGTTTGAATGATGATCACTTTAAACAAATTGAAGCTGGAGCATTGAAGGCGGTTGCGGAAAAACAACCCTTTGAGCGCATTGAAGTGACACGTGACCAGGCGCTTGAGATATTTTCTGATAATAAGTTTAAGGTTGAAATTATCAATGATTTGCCTGCTGACAAGACCATAACAGTGTACAGATGTGGACCCCTTATTGATTTGTGTCGAGGACCCCATATTCCTAATACATCCTTTGTGAAAGCAATTGCATGTTTGAAGGCTTCGTCAGCATATTGGAGGGGGGACAAAGATAGAGAAAGTTTACAAAGAGTTTATGGCATATCCTATCCTGATCAGAAGAGTTTAAAGGAATATTTGCATCGGCTTGAAGAGGCTAAAAAGTACGATCACAGGATTTTGGGGGTGAAACAAGAGCTTATTCTTCATCATGAGTGGAGCCCGGGAAGCTGGTTTTTTCTTCCACACGGTACTCGCGTCTACAACAAACTTATGAACTTCATTAGAAATCAGTACAGAGACAGGGGCTATCAAGAGGTTATATCACCGAATATGTATAACATGGAGCTGTGGAAGGCATCTGGTCATGCAGAAAAGTATAAAGATGACATGTTTGTTTTAGAGGTTGACAAACAAGAATTTGGATTGAAACCAATGAATTGCCCAGGACACTGCTTGATGTTTAAACACAGAGTTCGTTCATATAGAGAACTTCCTCTTCGTTTTGCTGATTTTGGGGTTTTGCATCGAAATGAGGCCAGTGGTGCCCTAAGTGGATTAACACGTGTTAGGAGATTTCAGCAGGATGATGCACATATTTTCTGCACGGAGTCCCAGGTTAAAGATGAAGTGAGAAAAGCCTTGGACTTCATTGATTATGTCTATCAAATATTTGGTTTCACATATGAACTGAAACTTTCAACGAGGCCAGAGAATAAGCTCGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTTTGGCAAGCCATGGCAGTTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGATATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTCTACAGCTTGATTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGGCCTGTTATGATACACAGAGCCATTCTAGGATCAGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCAATTTTGTGCCCTGTTTCTGAGAAATCACAAGCTTATGCTCTGAAGGTTCGAGATCAGATTCACCAAGCAGGATATCATGTAGATGCTGATACAACTGATAGGAAGATTCAGAAGAAGATAAGAGAAGCTCAGTTAGCACAGTACAACTACATCTTGGTTGTTGGGGAAGAGGAAGCTAATACAGGACAGGTGAGTGTAAGAGTCAGGGATAAGGCAGACCATAGCGTTATGACCATTGAGAACCTGCTCAAACACTTCAATGACGAGGTTGCAGCTTTCCACTGA 2142 0.4332 MLCSLIRLRRNSSSTSFLHRLSNRFYSSSTVFAAASAAMVVHAKDESYLSATIPKRVSLFEAIQAEQQTRRLSLSPDPIKVTLPDGKVKEGKKWQTTPFDVAREISKNLANNALISKVNGVLWDMNRPLEEDSLLQIFKFDDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGELGLNDDHFKQIEAGALKAVAEKQPFERIEVTRDQALEIFSDNKFKVEIINDLPADKTITVYRCGPLIDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPHGTRVYNKLMNFIRNQYRDRGYQEVISPNMYNMELWKASGHAEKYKDDMFVLEVDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTESQVKDEVRKALDFIDYVYQIFGFTYELKLSTRPENKLGDDETWDRAESALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYALKVRDQIHQAGYHVDADTTDRKIQKKIREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHSVMTIENLLKHFNDEVAAFH 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04715 713 FunFam Threonine--tRNA ligase mitochondrial 1 610 713 - -
Vifa1g04715 713 SUPERFAMILY Class II aaRS ABD-related 604 709 - -
Vifa1g04715 713 FunFam Probable threonine--tRNA ligase, cytoplasmic 434 609 - -
Vifa1g04715 713 Gene3D - 610 712 IPR036621 -
Vifa1g04715 713 Pfam TGS domain 79 139 IPR004095 -
Vifa1g04715 713 ProSiteProfiles TGS domain profile. 77 139 IPR004095 -
Vifa1g04715 713 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 247 296 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vifa1g04715 713 SUPERFAMILY TGS-like 79 139 IPR012676 -
Vifa1g04715 713 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 345 611 IPR006195 -
Vifa1g04715 713 FunFam Threonyl-tRNA synthetase, mitochondrial 143 300 - -
Vifa1g04715 713 CDD ThrRS_anticodon 616 705 IPR047246 -
Vifa1g04715 713 Pfam Anticodon binding domain 618 705 IPR004154 -
Vifa1g04715 713 FunFam Threonine--tRNA ligase mitochondrial 1 300 428 - -
Vifa1g04715 713 FunFam Threonine--tRNA ligase, cytoplasmic 77 138 - -
Vifa1g04715 713 SUPERFAMILY Class II aaRS and biotin synthetases 320 603 IPR045864 -
Vifa1g04715 713 CDD ThrRS_core 320 616 IPR033728 -
Vifa1g04715 713 Hamap Threonine--tRNA ligase [thrS]. 144 711 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa1g04715 713 NCBIfam threonine--tRNA ligase 150 708 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa1g04715 713 Gene3D - 142 300 - -
Vifa1g04715 713 Gene3D - 77 138 IPR012675 -
Vifa1g04715 713 PANTHER THREONINE-TRNA LIGASE 47 712 - -
Vifa1g04715 713 SMART tRNA_SAD_4 247 296 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vifa1g04715 713 CDD TGS_ThrRS 79 144 - -
Vifa1g04715 713 PRINTS Threonyl-tRNA synthetase signature 406 434 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa1g04715 713 PRINTS Threonyl-tRNA synthetase signature 584 597 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa1g04715 713 PRINTS Threonyl-tRNA synthetase signature 611 623 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa1g04715 713 PRINTS Threonyl-tRNA synthetase signature 540 568 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa1g04715 713 PRINTS Threonyl-tRNA synthetase signature 439 462 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa1g04715 713 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 401 606 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vifa1g04715 713 SUPERFAMILY ThrRS/AlaRS common domain 141 318 IPR018163 GO:0000166
Vifa1g04715 713 Gene3D Bira Bifunctional Protein; Domain 2 302 609 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04715 Vifa-Chr1 736480551 736488516 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04715 K01868 - gmx:100802879 1300.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04715 1 736480551 736488516 Vifa1g04715 1 736480551 736488516 ECH