Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04685 ATGGCGGATTCATCCCCTTCTCCCGTAACCCTAGAACCCAATCCTCACCACAATTCCCAACCTCCATCTCCCAACCCCGCTCCCAACCCCGCTCCCAACCAACCCGATCTACCTCCCCAACCGTCACAATCGCAATCTACACCACCCTCTTCCACACCCCTCCCCACAAACCCTAATCCCAATCAACCCTTACCAATTCCACCGTCACTTCCTCCGCCTCCTACTTTATCATATGCAACCGGAGCCCCGCCGCAAATTCCCGGTGTTCTCCCTCCGTCGGCTCCCTCCTTCCGCCCGCTTGGTGCTCAAGTGCCGCAGTTCACTCCGTTGCCCAATCCTGCCGGTGTCTACCAAAACCCTAATCCACCTCCCGGCGTGTCCGGCTCGGTTCCGATGCCGCAGATGCAACCGATGATGTCGTATCAGGTTCCAGGGACTAACCCTGCAATGAGACACTATGCTCCTATCCCAAATGGTTACGCCATGCATCCACAAGGACCTCTAAACCCTGCAGGAATTCCTCGTTATCCACCTCCTTATGGAACTATGGTTCGTCCTGTATATCCTCCACGCCTTCCTGGAGCAATCAACATGCTTCCAGTTTCACGCCCACCTGTTGCAGGGATCCCTTCAATTCGCCCTATTATTCCTCCTATTGTCAGACCTGTGGTTCTTCCTAGTGTTACTCCGTCTGAGAAGCAACATACCACCGTTTACATTGGCAAGATTGCACCAACCGTGGAAAATGAGTTCATGCTTTCTCTGCTTAAATTATGTGGGAATATTAAGAGCTGGAAAAGACCTCAGGATTTATCAAGTGGGACTCCTAAAAGTTTTGGGTTTTATGAGTTTGATACTGCTGAAGGGGTTCTCCGTGCTTTACGACTCCTTACCAAATTGAACATTGATGGGCAAGAACTAATGATCAATGTAGATGAAGCTATGAGAAACTATCTGGAGCGTTATGTACAAAAAAAAGCTGAGAGTTCAAAGGAAAAGGAAACTCAGGCAGCAGAAGCTGAAAAAGACGGTGAGGTTGCAAAACCTTCTGATGTAAATGAGGATGCAAATCCTGATCCAGAGCTCTCAAATAAAGAAGACGGTAATGATTCAGTGAACAAGAAATCCCATGATGTGGTAACTTTTGGGATTGTTACGGATGAAGATAGGGAAGCTGATCGAGACACTTTAGAAAAGATCAAGACAATGATAGAGGAGAGATTGAAGACAAGACCTTTGCCTCCACCACCTCCGCCGCCAATCCGTGATGGTTCTGTGGATTCATTTTCCGAACAACCTACTAAAACAAGAGAAGGTGACTCTGATGTGGATCCAAAGAAGAGTGAAGCGGCTGAAGATAAAAATGAGAGAGATGCAAATGGTGATAATAAGCCCGCCAGTGAACATGATAGACCCGAAACCCCCGACAGAAGGCTTGACAGGAAAAGCAGGGAGAGAGACCGAGACAGGGAGCTGAAACGAGAAAAGGAAAGAGAAGTTGAGAGATATGAAAGAGAAGCTGAGCGGGAACGTATTCGGAAAGAGAGGGAACAAAAACGGAGGATCGAGGAGGTTGAGCGTCAGTTTGAAATATATTTGAAGGATTGGGAGTATAGAGAAAGAGAGAAAGAAAAAGAACGACAATATGAAAGGGAGAAGGAGAAGGACAGGGAACGCAAACGAAGAAAGGAAATACTTCACGATGAAGAGGATGATGATGGGGATTCTAGGAAGAGATGGCGCAGAAATGCGATAGAGGATAAGAGAAAGAAGAGGCTGCGAGAAAAGGAAGATGACCTGGCCGACCGACAAAAAGAAGAGGAGGAAATTGCTGAGGCCAAGAAGAGGAATGACGAGGATCAACAACTGAATCGACAGAGAGATGCATTGAAGCTGTTGACAGAGCAAATTGTAAATGGTGGGGATGAAGCTATGACTACCAGAGAAGTTACTAGTGAAATAAAGAATATTATTGCTGTACAAGATACTGTAGCTGATTATAGTCATGAAGATCATATTGGTGATGGTAATGTACTAAATACTATCAATGATGAATCATCCATGGCATCTGTAGCCACAACCGATACACAGTCTAGTGGAAATGCTCCTATGAAGAAGTTGGGATTTGGTCTGGTTGGATCTGGAAAAAGAACAACCGTCCCTTCTGTTTTCCATGAAGATGAAGATGATGATGCGCACAAGGATAAAAAATTGAGGCCTTTGGTTCCGATTGATTACTCAACAGAGGAATTGCAGGCTGTTGAACCTACTGCTTCTGGGCCAACACCACCCAATTTGGCTGCAGCTGCAGAATTCGCCAAGCGTATATCTAGTACCAATTTCAAGGAAGAGAGGCTGGATGGAGAAAGGGATAGAAGTAGGCATTCACATGAAAAGTCTAACCATCGGGACAGGGATAGGAGTGATGAAGACGGCACTCATCACAGAGATGAACACAGGGAGAAAAATTCTGACCGTGACAGGGATCGAGATCATGGGTTGGAGAAAAACAAGACTTACGATAACAGGAGGCTCTTGGACGCAAAACAATTAATTGATATGATACCAAAGACCAAGGAGGAGTTGTTCTCATATGAGATAGACTGGGCAGTGTATGACAAGCATCAATTACATGACAGAATGAGACCTTGGATTTCAAAGAAAATCAAAGAGTTTTTGGGAGAAGAAGAAAATACTCTGACAGACTATATTGTTTCTAGTACACAAGAACATGTGAAAGCATCTCAGATGCTAGAGAGTCTTCAGGTCATTTTAGATGAAGAAGCTGAAATGTTTGTTCTCAAGATGTGGAGAATGCTTATTTTTGAAATAAAGAAGGTGGAGACAGGGCTTGCTTTGAGGTCTAAATCATGA 2874 0.4516 MADSSPSPVTLEPNPHHNSQPPSPNPAPNPAPNQPDLPPQPSQSQSTPPSSTPLPTNPNPNQPLPIPPSLPPPPTLSYATGAPPQIPGVLPPSAPSFRPLGAQVPQFTPLPNPAGVYQNPNPPPGVSGSVPMPQMQPMMSYQVPGTNPAMRHYAPIPNGYAMHPQGPLNPAGIPRYPPPYGTMVRPVYPPRLPGAINMLPVSRPPVAGIPSIRPIIPPIVRPVVLPSVTPSEKQHTTVYIGKIAPTVENEFMLSLLKLCGNIKSWKRPQDLSSGTPKSFGFYEFDTAEGVLRALRLLTKLNIDGQELMINVDEAMRNYLERYVQKKAESSKEKETQAAEAEKDGEVAKPSDVNEDANPDPELSNKEDGNDSVNKKSHDVVTFGIVTDEDREADRDTLEKIKTMIEERLKTRPLPPPPPPPIRDGSVDSFSEQPTKTREGDSDVDPKKSEAAEDKNERDANGDNKPASEHDRPETPDRRLDRKSRERDRDRELKREKEREVERYEREAERERIRKEREQKRRIEEVERQFEIYLKDWEYREREKEKERQYEREKEKDRERKRRKEILHDEEDDDGDSRKRWRRNAIEDKRKKRLREKEDDLADRQKEEEEIAEAKKRNDEDQQLNRQRDALKLLTEQIVNGGDEAMTTREVTSEIKNIIAVQDTVADYSHEDHIGDGNVLNTINDESSMASVATTDTQSSGNAPMKKLGFGLVGSGKRTTVPSVFHEDEDDDAHKDKKLRPLVPIDYSTEELQAVEPTASGPTPPNLAAAAEFAKRISSTNFKEERLDGERDRSRHSHEKSNHRDRDRSDEDGTHHRDEHREKNSDRDRDRDHGLEKNKTYDNRRLLDAKQLIDMIPKTKEELFSYEIDWAVYDKHQLHDRMRPWISKKIKEFLGEEENTLTDYIVSSTQEHVKASQMLESLQVILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04685 957 Coils Coil 590 636 - -
Vifa1g04685 957 SMART pwi_2 873 946 IPR002483 GO:0006397
Vifa1g04685 957 MobiDBLite consensus disorder prediction 779 836 - -
Vifa1g04685 957 CDD RRM_RBM25 236 319 IPR034268 -
Vifa1g04685 957 Gene3D PWI domain 836 952 - -
Vifa1g04685 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 316 IPR000504 GO:0003723
Vifa1g04685 957 SUPERFAMILY RNA-binding domain, RBD 225 313 IPR035979 GO:0003676
Vifa1g04685 957 MobiDBLite consensus disorder prediction 721 741 - -
Vifa1g04685 957 Gene3D - 228 347 IPR012677 -
Vifa1g04685 957 Coils Coil 479 535 - -
Vifa1g04685 957 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 957 - -
Vifa1g04685 957 MobiDBLite consensus disorder prediction 115 129 - -
Vifa1g04685 957 Coils Coil 539 559 - -
Vifa1g04685 957 MobiDBLite consensus disorder prediction 541 626 - -
Vifa1g04685 957 MobiDBLite consensus disorder prediction 326 517 - -
Vifa1g04685 957 MobiDBLite consensus disorder prediction 326 374 - -
Vifa1g04685 957 SUPERFAMILY PWI domain 878 945 IPR036483 GO:0006397
Vifa1g04685 957 MobiDBLite consensus disorder prediction 541 627 - -
Vifa1g04685 957 MobiDBLite consensus disorder prediction 433 517 - -
Vifa1g04685 957 MobiDBLite consensus disorder prediction 15 94 - -
Vifa1g04685 957 Pfam PWI domain 880 943 IPR002483 GO:0006397
Vifa1g04685 957 Coils Coil 323 343 - -
Vifa1g04685 957 MobiDBLite consensus disorder prediction 381 408 - -
Vifa1g04685 957 FunFam RNA Binding Motif protein homolog 836 952 - -
Vifa1g04685 957 ProSiteProfiles PWI domain profile. 860 957 IPR002483 GO:0006397
Vifa1g04685 957 MobiDBLite consensus disorder prediction 1 129 - -
Vifa1g04685 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 307 IPR000504 GO:0003723
Vifa1g04685 957 SMART rrm1_1 237 310 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04685 Vifa-Chr1 732290454 732296762 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04685 K12822 - gmx:100809428 1144.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04685 1 732290454 732296762 Vifa1g04685 1 732290454 732296762 ECH